Multitask Balanced and Recalibrated Network for Medical Code Prediction by Sun, Wei, Ji, Shaoxiong, Cambria, Erik, Marttinen, Pekka

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Efficient Acquisition Rules for Model-Based Approximate Bayesian Computation by Järvenpää, Marko, Gutmann, Michael U., Pleska, Arijus, Vehtari, Aki, Marttinen, Pekka

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Parallel Gaussian Process Surrogate Bayesian Inference with Noisy Likelihood Evaluations by Järvenpää, Marko, Gutmann, Michael U., Vehtari, Aki, Marttinen, Pekka

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Plasmids Shaped the Recent Emergence of the Major Nosocomial Pathogen Enterococcus faecium by Arredondo-Alonso, S, Top, J, McNally, A, Puranen, S, Pesonen, M, Pensar, J, Marttinen, P, Braat, J C, Rogers, M R C, van Schaik, W, Kaski, S, Willems, R J L, Corander, J, Schürch, A C

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A Unified Review of Deep Learning for Automated Medical Coding by Ji, Shaoxiong, Li, Xiaobo, Sun, Wei, Dong, Hang, Taalas, Ara, Zhang, Yijia, Wu, Honghan, Pitkänen, Esa, Marttinen, Pekka

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Single-Cell Genomics Reveals Hundreds of Coexisting Subpopulations in Wild Prochlorococcus by Kashtan, Nadav, Roggensack, Sara E., Rodrigue, Sébastien, Thompson, Jessie W., Biller, Steven J., Coe, Allison, Ding, Huiming, Marttinen, Pekka, Malmstrom, Rex R., Stocker, Roman, Follows, Michael J., Stepanauskas, Ramunas, Chisholm, Sallie W.

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Modelling G×E with historical weather information improves genomic prediction in new environments by Gillberg, Jussi, Marttinen, Pekka, Mamitsuka, Hiroshi, Kaski, Samuel

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Informative Bayesian Neural Network Priors for Weak Signals by Cui, Tianyu, Havulinna, Aki, Marttinen, Pekka, Kaski, Samuel

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GAUSSIAN PROCESS MODELLING IN APPROXIMATE BAYESIAN COMPUTATION TO ESTIMATE HORIZONTAL GENE TRANSFER IN BACTERIA by Järvenpää, Marko, Gutmann, Michael U., Vehtari, Aki, Marttinen, Pekka

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HAPNEST: efficient, large-scale generation and evaluation of synthetic datasets for genotypes and phenotypes by Wharrie, Sophie, Yang, Zhiyu, Raj, Vishnu, Monti, Remo, Gupta, Rahul, Wang, Ying, Martin, Alicia, O’Connor, Luke J, Kaski, Samuel, Marttinen, Pekka, Palamara, Pier Francesco, Lippert, Christoph, Ganna, Andrea

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Errors-in-Variables Modeling of Personalized Treatment-Response Trajectories by Zhang, Guangyi, Ashrafi, Reza A., Juuti, Anne, Pietilainen, Kirsi, Marttinen, Pekka

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Evaluation of polygenic scoring methods in five biobanks shows larger variation between biobanks than methods and finds benefits of ensemble learning by Monti, Remo, Eick, Lisa, Hudjashov, Georgi, Läll, Kristi, Kanoni, Stavroula, Wolford, Brooke N., Wingfield, Benjamin, Pain, Oliver, Wharrie, Sophie, Jermy, Bradley, McMahon, Aoife, Hartonen, Tuomo, Heyne, Henrike, Mars, Nina, Lambert, Samuel, Hveem, Kristian, Inouye, Michael, van Heel, David A., Mägi, Reedik, Marttinen, Pekka, Ripatti, Samuli, Ganna, Andrea, Lippert, Christoph

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Periodic mobile application (eMOM) with self-tracking of glucose and lifestyle improves treatment of diet-controlled gestational diabetes without human guidance: a randomized contr... by Kytö, Mikko, Hotta, Shinji, Niinistö, Sari, Marttinen, Pekka, Korhonen, Tuuli E., Markussen, Lisa T., Jacucci, Giulio, Sievänen, Harri, Vähä-Ypyä, Henri, Korhonen, Ilkka, Virtanen, Suvi, Heinonen, Seppo, Koivusalo, Saila B.

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Self-Supervised Forecasting in Electronic Health Records With Attention-Free Models by Kumar, Yogesh, Ilin, Alexander, Salo, Henri, Kulathinal, Sangita, Leinonen, Maarit K., Marttinen, Pekka

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International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact by Gladstone, Rebecca A., Lo, Stephanie W., Lees, John A., Croucher, Nicholas J., van Tonder, Andries J., Corander, Jukka, Page, Andrew J., Marttinen, Pekka, Bentley, Leon J., Ochoa, Theresa J., Ho, Pak Leung, du Plessis, Mignon, Cornick, Jennifer E., Kwambana-Adams, Brenda, Benisty, Rachel, Nzenze, Susan A., Madhi, Shabir A., Hawkins, Paulina A., Everett, Dean B., Antonio, Martin, Dagan, Ron, Klugman, Keith P., von Gottberg, Anne, McGee, Lesley, Breiman, Robert F., Bentley, Stephen D.

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COVIDNet: An Automatic Architecture for COVID-19 Detection With Deep Learning From Chest X-Ray Images by He, Lang, Tiwari, Prayag, Su, Rui, Shi, Xiuying, Marttinen, Pekka, Kumar, Neeraj

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ELFI: Engine for Likelihood-Free Inference by Lintusaari, Jarno, Vuollekoski, Henri, Kangasraasio, Antti, Skyten, Kusti, Jarvenpaa, Marko, Marttinen, Pekka, Gutmann, Michael U, Vehtari, Aki, Corander, Jukka, Kaski, Samuel

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Modelling methicillin-resistant Staphylococcus aureus decolonization: interactions between body sites and the impact of site-specific clearance by Poyraz, Onur, Sater, Mohamad R A, Miller, Loren G, McKinnell, James A, Huang, Susan S, Grad, Yonatan H, Marttinen, Pekka

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Improving genomics-based predictions for precision medicine through active elicitation of expert knowledge by Sundin, Iiris, Peltola, Tomi, Micallef, Luana, Afrabandpey, Homayun, Soare, Marta, Mamun Majumder, Muntasir, Daee, Pedram, He, Chen, Serim, Baris, Havulinna, Aki, Heckman, Caroline, Jacucci, Giulio, Marttinen, Pekka, Kaski, Samuel

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Quantifying Movement Behavior of Chronic Low Back Pain Patients in Virtual Reality by Gröhn, Tommi, Liikkanen, Sammeli, Huttunen, Teppo, Mäkinen, Mika, Liljeberg, Pasi, Marttinen, Pekka

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