Detection of single nucleotide polymorphisms in virus genomes assembled from high-throughput sequencing data: large-scale performance testing of sequence analysis strategies by Rollin, Johan, Bester, Rachelle, Brostaux, Yves, Caglayan, Kadriye, De Jonghe, Kris, Eichmeier, Ales, Foucart, Yoika, Haegeman, Annelies, Koloniuk, Igor, Kominek, Petr, Maree, Hans, Onder, Serkan, Posada Céspedes, Susana, Roumi, Vahid, Šafářová, Dana, Schumpp, Olivier, Ulubas Serce, Cigdem, Sõmera, Merike, Tamisier, Lucie, Vainio, Eeva, van der Vlugt, Rene Aa, Massart, Sebastien

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V-pipe: a computational pipeline for assessing viral genetic diversity from high-throughput data by Posada-Céspedes, Susana, Seifert, David, Topolsky, Ivan, Jablonski, Kim Philipp, Metzner, Karin J, Beerenwinkel, Niko

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Bioinformatics Meets Virology: The European Virus Bioinformatics Center's Second Annual Meeting by Ibrahim, Bashar, Arkhipova, Ksenia, Andeweg, Arno C, Posada-Céspedes, Susana, Enault, François, Gruber, Arthur, Koonin, Eugene V, Kupczok, Anne, Lemey, Philippe, McHardy, Alice C, McMahon, Dino P, Pickett, Brett E, Robertson, David L, Scheuermann, Richard H, Zhernakova, Alexandra, Zwart, Mark P, Schönhuth, Alexander, Dutilh, Bas E, Marz, Manja

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Swiss public health measures associated with reduced SARS-CoV-2 transmission using genome data by Nadeau, Sarah A, Vaughan, Timothy G, Beckmann, Christiane, Topolsky, Ivan, Chen, Chaoran, Hodcroft, Emma, Schär, Tobias, Nissen, Ina, Santacroce, Natascha, Burcklen, Elodie, Ferreira, Pedro, Jablonski, Kim Philipp, Posada-Céspedes, Susana, Capece, Vincenzo, Seidel, Sophie, Santamaria de Souza, Noemi, Martinez-Gomez, Julia M, Cheng, Phil, Bosshard, Philipp P, Levesque, Mitchell P, Kufner, Verena, Schmutz, Stefan, Zaheri, Maryam, Huber, Michael, Trkola, Alexandra, Cordey, Samuel, Laubscher, Florian, Gonçalves, Ana Rita, Aeby, Sébastien, Pillonel, Trestan, Jacot, Damien, Bertelli, Claire, Greub, Gilbert, Leuzinger, Karoline, Stange, Madlen, Mari, Alfredo, Roloff, Tim, Seth-Smith, Helena, Hirsch, Hans H, Egli, Adrian, Redondo, Maurice, Kobel, Olivier, Noppen, Christoph, du Plessis, Louis, Beerenwinkel, Niko, Neher, Richard A, Beisel, Christian, Stadler, Tanja

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Comparing mutational pathways to lopinavir resistance in HIV-1 subtypes B versus C by Posada-Céspedes, Susana, Van Zyl, Gert, Montazeri, Hesam, Kuipers, Jack, Rhee, Soo-Yon, Kouyos, Roger, Günthard, Huldrych F, Beerenwinkel, Niko

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Heritability of the HIV-1 reservoir size and decay under long-term suppressive ART by Wan, Chenjie, Bachmann, Nadine, Mitov, Venelin, Blanquart, François, Céspedes, Susana Posada, Turk, Teja, Neumann, Kathrin, Beerenwinkel, Niko, Bogojeska, Jasmina, Fellay, Jacques, Roth, Volker, Böni, Jürg, Perreau, Matthieu, Klimkait, Thomas, Yerly, Sabine, Battegay, Manuel, Walti, Laura, Calmy, Alexandra, Vernazza, Pietro, Bernasconi, Enos, Cavassini, Matthias, Metzner, Karin J., Günthard, Huldrych F., Kouyos, Roger D.

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Recent advances in inferring viral diversity from high-throughput sequencing data by Posada-Cespedes, Susana, Seifert, David, Beerenwinkel, Niko

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Glycosphingolipids are mediators of cancer plasticity through independent signaling pathways by Cumin, Cécile, Huang, Yen-Lin, Rossdam, Charlotte, Ruoff, Felix, Céspedes, Susana Posada, Liang, Ching-Yeu, Lombardo, Flavio C., Coelho, Ricardo, Rimmer, Natalie, Konantz, Martina, López, Mónica Núñez, Alam, Shahidul, Schmidt, Alexander, Calabrese, Diego, Fedier, Andre, Vlajnic, Tatjana, von Itzstein, Mark, Templin, Markus, Buettner, Falk F.R., Everest-Dass, Arun, Heinzelmann-Schwarz, Viola, Jacob, Francis

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Global disparities in SARS-CoV-2 genomic surveillance by Brito, Anderson F., Semenova, Elizaveta, Dudas, Gytis, Hassler, Gabriel W., Kalinich, Chaney C., Kraemer, Moritz U. G., Ho, Joses, Tegally, Houriiyah, Githinji, George, Agoti, Charles N., Matkin, Lucy E., Whittaker, Charles, Howden, Benjamin P., Sintchenko, Vitali, Zuckerman, Neta S., Mor, Orna, Blankenship, Heather M., de Oliveira, Tulio, Lin, Raymond T. P., Siqueira, Marilda Mendonça, Resende, Paola Cristina, Vasconcelos, Ana Tereza R., Spilki, Fernando R., Aguiar, Renato Santana, Alexiev, Ivailo, Ivanov, Ivan N., Philipova, Ivva, Carrington, Christine V. F., Sahadeo, Nikita S. D., Branda, Ben, Gurry, Céline, Maurer-Stroh, Sebastian, Naidoo, Dhamari, von Eije, Karin J., Perkins, Mark D., van Kerkhove, Maria, Hill, Sarah C., Sabino, Ester C., Pybus, Oliver G., Dye, Christopher, Bhatt, Samir, Flaxman, Seth, Suchard, Marc A., Grubaugh, Nathan D., Baele, Guy, Faria, Nuno R.

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Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020 by Alm, Erik, Broberg, Eeva K, Connor, Thomas, Hodcroft, Emma B, Komissarov, Andrey B, Maurer-Stroh, Sebastian, Melidou, Angeliki, Neher, Richard A, O'Toole, Áine, Pereyaslov, Dmitriy

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Cariotipo del Titi Gris (Saguinus leucopus) Mediante Bandas R-Replicativas by Susana Posada Céspedes, Diana Milena Maturana Mena, Juan Bautista López Ortiz

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Detecting patterns of co-variation in deep-sequenced virus populations by Posada-Cespedes, Susana, Seifert, David, Beerenwinkel, Niko

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CARIOTIPO DEL TITÍ GRIS (Saguinus leucopus) MEDIANTE BANDAS R-REPLICATIVAS KARYOTYPE OF TITÍ GREY (Saguinus leucopus) THROUGH R-REPLICATIVE BANDS by Susana Posada Céspedes, Diana Milena Maturana Mena, Juan Bautista López Ortiz

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Within-patient genetic diversity of SARS-CoV-2 by Kuipers, Jack, Batavia, Aashil A, Jablonski, Kim Philipp, Bayer, Fritz, Borgsmüller, Nico, Dondi, Arthur, Monica-Andreea Drăgan, Ferreira, Pedro, Jahn, Katharina, Lamberti, Lisa, Pirkl, Martin, Posada-Céspedes, Susana, Topolsky, Ivan, Nissen, Ina, Santacroce, Natascha, Burcklen, Elodie, Schär, Tobias, Capece, Vincenzo, Beckmann, Christiane, Kobel, Olivier, Noppen, Christoph, Redondo, Maurice, Nadeau, Sarah, Seidel, Sophie, Noemie Santamaria De Souza, Beisel, Christian, Stadler, Tanja, Beerenwinkel, Niko

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