EGFR exon 20 insertion mutations in lung adenocarcinomas: prevalence, molecular heterogeneity, and clinicopathologic characteristics by Arcila, Maria E, Nafa, Khedoudja, Chaft, Jamie E, Rekhtman, Natasha, Lau, Christopher, Reva, Boris A, Zakowski, Maureen F, Kris, Mark G, Ladanyi, Marc

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The most likely but largely ignored triggering factor for breast (or all) cancer invasion by Man, Yan-Gao, Mannion, Ciaran, Stojadinovic, Alexander, Peoples, George E, Cho, William Cs, Fu, Sidney W, Tan, Xiaohui, Hsiao, Yi-Hsuan, Liu, Aijun, Semczuk, Andrzej, Zarogoulidis, Paul, Gapeev, Andrei B, Deng, Xiyun, Peng, Xiaoning, Reva, Boris A, Omelchenko, Tatiana, Wang, Jialian, Song, Guohong, Chen, Tingtao

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Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma by Savage, Sara R., Eguez, Rodrigo Vargas, Li, Yize, Jaehnig, Eric J., Cieślik, Marcin, Chang, Hui-Yin, Li, Kai, Li, Qing Kay, Clark, David J., Hu, Yingwei, Cao, Liwei, Wang, Yuefan, Cho, Kyung-Cho, Liao, Yuxing, Anurag, Meenakshi, Ji, Jiayi, Zhou, Daniel Cui, Carr, Steven A., Zhang, Zhen, Chen, Xi S., Pico, Alexander R., Kinsinger, Christopher R., Robles, Ana I., An, Eunkyung, Hiltke, Tara, Mesri, Mehdi, Weaver, Alissa M., Sikora, Andrew G., Wierzbicka, Małgorzata, Wiznerowicz, Maciej, Satpathy, Shankha, Gillette, Michael A., Miles, George, Ellis, Matthew J., Omenn, Gilbert S., Boja, Emily S., Dhanasekaran, Saravana M., Agarwal, Anupriya, Avanessian, Shayan C., Bathe, Oliver F., Birger, Chet, Birrer, Michael J., Bocik, William E., Borate, Uma, Borucki, Melissa, Cai, Shuang, Charamut, Alyssa, Chen, Lin S., Chowdhury, Shrabanti, Clauser, Karl R., Culpepper, Houston, Czernicki, Tomasz, D'Angelo, Fulvio, Domagalski, Marcin J., Dyer, Maureen, Edwards, Nathan J., Ermakova, Tatiana S., Francis, Alicia, Goldthwaite, Charles A., Hannick, Linda I., Hayes, David N., Heiman, David, Jewell, Scott D., Jones, Corbin D., Krek, Azra, Liu, Tao, Ma, Weiping, Malc, Ewa, Malovannaya, Anna, Mareedu, Sailaja, Marrero-Oliveras, Annette, McGee, John, Mieczkowski, Piotr, Newton, Chelsea J., Ozbek, Umut, Payne, Samuel H., Pazardzhikliev, Dimitar Dimitrov, Petralia, Francesca, Piehowski, Paul D., Polonskaya, Larisa, Ponomareva, Elena V., Qu, Ning, Ramkissoon, Shakti, Reva, Boris, Richey, Shannon, Robinson, Karna, Roche, Nancy, Rodland, Karin, Shi, Yan, Shutack, Yvonne, Sokoll, Lori J., Stein, Stephen E., Szopa, Wojciech, Tyner, Jeffrey, Vasilev, Lyubomir Valkov, Whiteaker, Jeffrey R., Wu, Yige, Yi, Xinpei, Zakhartsev, Yuriy, Zhao, Grace

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The Somatic Genomic Landscape of Glioblastoma by Brennan, Cameron W., Noushmehr, Houtan, Salama, Sofie R., Berman, Samuel H., Beroukhim, Rameen, Wu, Chang-Jiun, Yung, W.K., Sougnez, Carrie, Finocchiaro, Gaetano, O’Neill, Brian P., Myers, Jerome, Weisenberger, Daniel J., Penny, Robert, Marra, Marco, Meyerson, Matthew, Chin, Lynda, Ostrom, Quinn, Wolinsky, Yingli, Black, Keith L., Boulos, Madgy, Brown, Jenn, Czerinski, Christine, Koyfman, Yakov, Rabeno, Brenda, Auman, J.Todd, Lee, Semin, Kalkanis, Steven, Mikkelsen, Tom, Scarpace, Lisa, Reynolds, Sheila, Curley, Erin, Morris, Scott, Yena, Peggy, Cuppini, Lucia, Maderna, Emanuela, Pollo, Bianca, Hoadley, Katherine A., Shi, Yan, Topal, Michael D., Aksoy, B. Arman, Antipin, Yevgeniy, Borsu, Laetitia, Brennan, Cameron W., Gao, Jianjiong, Jacobsen, Anders, Ladanyi, Marc, Lash, Alex, Liang, Yupu, Chen, Qing-Rong, Shaw, Kenna R. Mills, Eckman, John, Eley, Greg, Jensen, Mark A., Kahn, Ari, Pot, David A., Wan, Yunhu, Hansen, Nathan, Hothi, Parvi, Lau, Ching, Cherniack, Andrew D., Noble, Mike, Cibulskis, Kristian, Frazer, Scott, Gabriel, Stacey B., Gehlenborg, Nils, Gentry, Jeff, Heiman, David, Lander, Eric S., Mallard, Will, Meyerson, Matthew, Getz, Gad, Dees, Nathan N., Fulton, Robert S., Kanchi, Krishna-Latha, Devine, Karen, Carlin, Daniel, Ellrott, Kyle, Haussler, David, Ng, Sam, Salama, Sofie R., Waltman, Peter, Zhu, Jing, Frentzen, Barbara, Friedman, William, McTiernan, Raquel, Perou, Charles M., Akbani, Rehan, Aldape, Kenneth, Bogler, Oliver, Fuller, Gregory N., Mills, Gordon, Protopopov, Alexei, Wu, Chang-Jiun, Weinstein, John N., Verhaak, Roel G.W., Noushmehr, Houtan, Triche, Timothy J., Laird, Peter W., VanMeir, Erwin G., Brat, Daniel

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Histopathologic and proteogenomic heterogeneity reveals features of clear cell renal cell carcinoma aggressiveness by Lih, Tung-Shing M., Mannan, Rahul, Cieslik, Marcin, Wu, Yige, Lu, Rita Jiu-Hsien, Clark, David J., Kołodziejczak, Iga, Hong, Runyu, Caravan, Wagma, Naser Al Deen, Nataly, Hosseini, Noshad, Krug, Karsten, Xu, Yuanwei, Wendl, Michael C., Zhang, Cissy, Cho, Hanbyul, Leprevost, Felipe da Veiga, Teo, Guo Ci, Reimers, Melissa A., Lazar, Alexander J., Chinnaiyan, Arul M., Van Tine, Brian A., Rodland, Karin D., Getz, Gad, Mani, D.R., Hostetter, Galen, Linehan, W. Marston, Jewell, Scott D., Omenn, Gilbert S., Wiznerowicz, Maciej, Robles, Ana I., Hiltke, Tara, An, Eunkyung, Rodriguez, Henry, Chan, Daniel W., Nesvizhskii, Alexey I., Zhang, Hui, Francis, Alicia, Paulovich, Amanda G., Antczak, Andrzej, Green, Anthony, Colaprico, Antonio, Pruetz, Barb, Yadav, Birendra Kumar, Reva, Boris, Fevrier-Sullivan, Brenda, Druker, Brian J., Goldthwaite, Charles A., Rohrer, Daniel C., Tansil, Darlene, Chesla, David, Duffy, Elizabeth, Schadt, Eri E., Bromiński, Gabriel, Wilson, George D., Hsieh, James, Lubiński, Jan, Bavarva, Jasmin, Huang, Jasmine, Hafron, Jason, Eschbacher, Jennifer, Hon, Jennifer, Francis, Jesse, Freymann, John, Wang, Joshua, Kirby, Justin, Zaalishvili, Kakhaber, Ketchum, Karen A., Um, Ki Sung, Domagalski, Marcin J., Tobin, Matt, Dyer, Maureen, Anurag, Meenakshi, Ittmann, Michael M., Roehrl, Michael H., Smith, Michael, Roche, Nancy, Maunganidze, Nicollette, Potapova, Olga, Castro, Patricia, Kurzawa, Paweł, Hariharan, Pushpa, Li, Qin, Montgomery, Rebecca, Smith, Richard D., Mareedu, Sailaja, Cerda, Sandra, Haynes, Sarah, Satpathy, Shankha, Richey, Shannon, Tsang, Shirley X., Cai, Shuang, Cao, Song, Gabriel, Stacey, Carr, Steven A., Liu, Tao, Bauer, Thomas, Le, Toan, Chen, Xi S., Zhang, Zhen

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A search for the most stable folds of protein chains by Finkelstein, Alexei V, Reva, Boris A

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Pan-cancer analysis of post-translational modifications reveals shared patterns of protein regulation by Geffen, Yifat, Anand, Shankara, Akiyama, Yo, Yaron, Tomer M., Song, Yizhe, Johnson, Jared L., Govindan, Akshay, Li, Yize, Huntsman, Emily, Wang, Liang-Bo, Birger, Chet, Heiman, David I., Zhang, Qing, Miller, Mendy, Calinawan, Anna, Belkin, Saveliy, Kerelsky, Alexander, Clauser, Karl R., Krug, Karsten, Satpathy, Shankha, Payne, Samuel H., Mani, D.R., Gillette, Michael A., Dhanasekaran, Saravana M., Thiagarajan, Mathangi, Mesri, Mehdi, Rodriguez, Henry, Robles, Ana I., Lazar, Alexander J., Ding, Li, Getz, Gad, An, Eunkyung, Anurag, Meenakshi, Bavarva, Jasmin, Birrer, Michael J., Cao, Song, Ceccarelli, Michele, Chinnaiyan, Arul M., Chowdhury, Shrabanti, Colaprico, Antonio, Carr, Steven A., da Veiga Leprevost, Felipe, Day, Corbin, Domagalski, Marcin J., Ellis, Matthew J., Fenyo, David, Foltz, Steven M., Francis, Alicia, Gonzalez Robles, Tania J., Gosline, Sara J.C., Gümüş, Zeynep H., Hiltke, Tara, Hong, Runyu, Hu, Yingwei, Huang, Chen, Iavarone, Antonio, Jewel, Scott D., Katsnelson, Lizabeth, Ketchum, Karen A., Kolodziejczak, Iga, Kumar-Sinha, Chandan, Krug, Karsten, Lei, Jonathan T., Liang, Wen-Wei, Liao, Yuxing, Lindgren, Caleb M., Liu, Tao, Liu, Wenke, Ma, Weiping, McKerrow, Wilson, Mesri, Mehdi, Newton, Chelsea, Omenn, Gilbert S., Paulovich, Amanda G., Petralia, Francesca, Pugliese, Pietro, Reva, Boris, Rodland, Karin D., Ruggles, Kelly V., Rodrigues, Fernanda Martins, Savage, Sara R., Schadt, Eric E., Schnaubelt, Michael, Schraink, Tobias, Shi, Zhiao, Smith, Richard D., Stathias, Vasileios, Storrs, Erik P., Selvan, Myvizhi Esai, Tan, Jimin, Thangudu, Ratna R., Wang, Joshua M., Wang, Pei, Wang, Ying (Cindy), Wen, Bo, Wu, Yige, Yi, Xinpei, Zhang, Bing, Zhang, Xu, Zhang, Zhen

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Pan-cancer proteogenomics connects oncogenic drivers to functional states by Porta-Pardo, Eduard, Bailey, Matthew H., Yaron, Tomer M., Stathias, Vasileios, Geffen, Yifat, Imbach, Kathleen J., Cao, Song, Anand, Shankara, Akiyama, Yo, Liu, Wenke, Wyczalkowski, Matthew A., Song, Yizhe, Storrs, Erik P., Wendl, Michael C., Zhang, Wubing, Sibai, Mustafa, Ruiz-Serra, Victoria, Terekhanova, Nadezhda V., Rodrigues, Fernanda Martins, Clauser, Karl R., Heiman, David I., Zhang, Qing, Aguet, Francois, Calinawan, Anna P., Birger, Chet, Satpathy, Shankha, Zhou, Daniel Cui, Wang, Liang-Bo, Baral, Jessika, Johnson, Jared L., Huntsman, Emily M., Pugliese, Pietro, Colaprico, Antonio, Iavarone, Antonio, Ricketts, Christopher J., Fenyö, David, Payne, Samuel H., Kumar-Sinha, Chandan, Lazar, Alexander J., Getz, Gad, An, Eunkyung, Anurag, Meenakshi, Bavarva, Jasmin, Birrer, Michael J., Calinawan, Anna, Ceccarelli, Michele, Chan, Daniel W., Chinnaiyan, Arul M., Cho, Hanbyul, Chowdhury, Shrabanti, Day, Corbin, Domagalski, Marcin J., Dou, Yongchao, Druker, Brian J., Edwards, Nathan, Selvan, Myvizhi Esai, Foltz, Steven M., Gonzalez Robles, Tania J., Gümüş, Zeynep H., Hiltke, Tara, Hostetter, Galen, Hu, Yingwei, Huang, Chen, Huntsman, Emily, Jaehnig, Eric J., Jewel, Scott D., Ji, Jiayi, Jiang, Wen, Katsnelson, Lizabeth, Ketchum, Karen A., Kolodziejczak, Iga, Lei, Jonathan T., Liao, Yuxing, Lindgren, Caleb M., Liu, Tao, Ma, Weiping, McKerrow, Wilson, Nesvizhskii, Alexey I., Oldroyd, Robert, Omenn, Gilbert S., Petralia, Francesca, Reva, Boris, Rodland, Karin D., Ruggles, Kelly V., Rykunov, Dmitry, Savage, Sara R., Schadt, Eric E., Schraink, Tobias, Shi, Zhiao, Smith, Richard D., Song, Xiaoyu, Tan, Jimin, Wang, Joshua M., Wang, Pei, Wen, Bo, Wiznerowicz, Maciej, Yi, Xinpei, Zhang, Bing, Zhang, Xu, Zhang, Zhen

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Integrative multi-omic cancer profiling reveals DNA methylation patterns associated with therapeutic vulnerability and cell-of-origin by Liang, Wen-Wei, Jayasinghe, Reyka G., Foltz, Steven M., Porta-Pardo, Eduard, Geffen, Yifat, Wendl, Michael C., Lazcano, Rossana, Kolodziejczak, Iga, Song, Yizhe, Govindan, Akshay, Demicco, Elizabeth G., Li, Xiang, Li, Yize, Sethuraman, Sunantha, Payne, Samuel H., Wiznerowicz, Maciej, Shen, Hui, Lazar, Alexander J., Robles, Ana I., Ding, Li, Aguet, François, Akiyama, Yo, An, Eunkyung, Anand, Shankara, Babur, Ozgun, Bavarva, Jasmin, Birger, Chet, Birrer, Michael, Cao, Song, Ceccarelli, Michele, Chan, Daniel, Chinnaiyan, Arul, Cho, Hanbyul, Chowdhury, Shrabanti, Clauser, Karl, Colaprico, Antonio, Zhou, Daniel Cui, Day, Corbin, Dhanasekaran, Mohan, Domagalski, Marcin, Dou, Yongchao, Druker, Brian, Ellis, Matthew, Selvan, Myvizhi Esai, Francis, Alicia, Getz, Gad, Robles, Tania Gonzalez, Gosline, Sara, Heiman, David, Hiltke, Tara, Hostetter, Galen, Huang, Chen, Huntsman, Emily, Iavarone, Antonio, Jewel, Scott, Jiang, Wen, Lee Johnson, Jared, Katsnelson, Lizabeth, Ketchum, Karen, Krug, Karsten, Kumar-Sinha, Chandan, Lei, Jonathan, Liao, Yuxing, Lindgren, Caleb, Liu, Tao, Liu, Wenke, Ma, Weiping, Rodrigues, Fernanda Martins, McKerrow, Wilson, Mesri, Mehdi, Newton, Chelsea, Oldroyd, Robert, Paulovich, Amanda, Petralia, Francesca, Pugliese, Pietro, Reva, Boris, Ruggles, Kelly, Rykunov, Dmitry, Satpathy, Shankha, Savage, Sara, Schadt, Eric, Schnaubelt, Michael, Schraink, Tobias, Smith, Dick, Song, Xiaoyu, Storrs, Erik, Terekhanova, Nadezhda, Thangudu, Ratna, Wang, Joshua, Wang, Pei, Wang, Ying (Cindy), Wen, Bo, Yaron, Tomer M., Zhang, Bing, Zhang, Qing, Zhang, Zhen, Chan, Daniel W., Dhanasekaran, Saravana M., Schürer, Stephan, Smith, Richard D.

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Comprehensive proteogenomic characterization of rare kidney tumors by Li, Ginny Xiaohe, Chen, Lijun, Hsiao, Yi, Mannan, Rahul, Zhang, Yuping, Luo, Jie, Petralia, Francesca, Cho, Hanbyul, Hosseini, Noshad, Leprevost, Felipe da Veiga, Calinawan, Anna, Li, Yize, Anand, Shankara, Dagar, Aniket, Geffen, Yifat, Kumar-Sinha, Chandan, Chugh, Seema, Le, Anne, Ponce, Sean, Guo, Shenghao, Zhang, Cissy, Schnaubelt, Michael, Al Deen, Nataly Naser, Chen, Feng, Caravan, Wagma, Houston, Andrew, Hopkins, Alex, Newton, Chelsea J., Wang, Xiaoming, Polasky, Daniel A., Haynes, Sarah, Yu, Fengchao, Jing, Xiaojun, Chen, Siqi, Robles, Ana I., Mesri, Mehdi, Thiagarajan, Mathangi, An, Eunkyung, Getz, Gad A., Linehan, W. Marston, Hostetter, Galen, Jewell, Scott D., Chan, Daniel W., Wang, Pei, Omenn, Gilbert S., Mehra, Rohit, Ricketts, Christopher J., Ding, Li, Chinnaiyan, Arul M., Cieslik, Marcin P., Zhang, Hui, Nesvizhskii, Alexey I., Lazar, Alexander J., Paulovich, Amanda G., Antczak, Andrzej, Green, Anthony, Ma’ayan, Avi, Pruetz, Barb, Zhang, Bing, Reva, Boris, Druker, Brian J., Goldthwaite, Charles A., Birger, Chet, Mani, D.R., Chesla, David, Fenyö, David, Schadt, Eric E., Wilson, George, Kołodziejczak, Iga, John, Ivy, Hafron, Jason, Vo, Josh, Zaalishvili, Kakhaber, Ketchum, Karen A., Rodland, Karin D., Nyce, Kristen, Wiznerowicz, Maciej, Domagalski, Marcin J., Anurag, Meenakshi, Borucki, Melissa, Gillette, Michael A., Birrer, Michael J., Edwards, Nathan J., Vatanian, Negin, VanderKolk, Pamela, McGarvey, Peter B., Dhir, Rajiv, Thangudu, Ratna R., Crispen, Reese, Smith, Richard D., Payne, Samuel H., Cottingham, Sandra, Cai, Shuang, Carr, Steven A., Liu, Tao, Le, Toan, Ma, Weiping, Zhang, Xu, Lu, Yin, Zhang, Zhen

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Deep learning integrates histopathology and proteogenomics at a pan-cancer level by Wang, Joshua M, Hong, Runyu, Demicco, Elizabeth G, Tan, Jimin, Lazcano, Rossana, Moreira, Andre L, Li, Yize, Calinawan, Anna, Razavian, Narges, Schraink, Tobias, Gillette, Michael A, Omenn, Gilbert S, An, Eunkyung, Rodriguez, Henry, Tsirigos, Aristotelis, Ruggles, Kelly V, Ding, Li, Robles, Ana I, Mani, D R, Rodland, Karin D, Lazar, Alexander J, Liu, Wenke, Fenyö, David

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What is the probability of a chance prediction of a protein structure with an rmsd of 6 å? by Reva, Boris A, Finkelstein, Alexei V, Skolnick, Jeffrey

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Comprehensive molecular characterization of clear cell renal cell carcinoma

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Abstract 5061: Genomic and functional analysis of Myxofibrosarcoma identifies novel prognostic markers and promising therapeutic targets by Lee, Ann Y., Crago, Aimee M., Agaram, Narasimhan P., Okada, Tomoyo, DeCarolis, Penelope, O'Connor, Rachael B., Qin, Li-Xuan, Khanin, Raya, Antipin, Yevgeniy, Reva, Boris A., Socci, Nicholas D., Singer, Samuel

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Search for the most stable folds of protein chains: I. Application of a self-consistent molecular field theory to a problem of protein three-dimensional structure prediction by Finkelstein, Alexei V., Reva, Boris A.

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Averaging interaction energies over homologs improves protein fold recognition in gapless threading by Reva, Boris A., Skolnick, Jeffrey, Finkelstein, Alexei V.

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Search for the most stable folds of protein chains: II. Computation of stable architectures of β-proteins using a self-consistent molecular field theory by Reva, Boris A., Finkelstein, Alexei V.

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Recognition of protein structure on coarse lattices with residue-residue energy functions by Reva, B A, Finkelstein, A V, Sanner, M, Olson, A J, Skolnick, J

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Search for the most stable folds of protein chains: I. Application of a self-consistent molecular field theory to a problem of protein three-dimensional structure prediction by Finkelstein, A V, Reva, B A

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Search for the most stable folds of protein chains: II. Computation of stable architectures of beta-proteins using a self-consistent molecular field theory by Reva, B A, Finkelstein, A V

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