Identifying Leukemia-Specific Neoepitopes from Next-Generation Sequencing Data to Develop Targeted Immunotherapy for Pediatric Acute Myeloid Leukemiaig by Biernacki, Melinda Ann, MD, Bleakley, Marie, MD, PhD, Cunningham, Tanya, MS, Culores, Nicholas, Meshinchi, Soheil, MD, Ries, Rhonda, MA, Dossa, Robson, PhD, Medina-Rodriguez, Indira, PhD, Chawla, Raghav, MD PhD

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Integrated stem cell signature and cytomolecular risk determination in pediatric acute myeloid leukemia by Huang, Benjamin J., Smith, Jenny L., Farrar, Jason E., Wang, Yi-Cheng, Umeda, Masayuki, Ries, Rhonda E., Leonti, Amanda R., Crowgey, Erin, Furlan, Scott N., Tarlock, Katherine, Armendariz, Marcos, Liu, Yanling, Shaw, Timothy I., Wei, Lisa, Gerbing, Robert B., Cooper, Todd M., Gamis, Alan S., Aplenc, Richard, Kolb, E. Anders, Rubnitz, Jeffrey, Ma, Jing, Klco, Jeffery M., Ma, Xiaotu, Alonzo, Todd A., Triche, Timothy, Meshinchi, Soheil

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Pan-cancer genome and transcriptome analyses of 1,699 paediatric leukaemias and solid tumours by Ma, Xiaotu, Liu, Yu, Liu, Yanling, Alexandrov, Ludmil B., Edmonson, Michael N., Gawad, Charles, Zhou, Xin, Li, Yongjin, Rusch, Michael C., Easton, John, Huether, Robert, Gonzalez-Pena, Veronica, Wilkinson, Mark R., Hermida, Leandro C., Davis, Sean, Sioson, Edgar, Pounds, Stanley, Cao, Xueyuan, Ries, Rhonda E., Wang, Zhaoming, Chen, Xiang, Dong, Li, Diskin, Sharon J., Smith, Malcolm A., Guidry Auvil, Jaime M., Meltzer, Paul S., Lau, Ching C., Perlman, Elizabeth J., Maris, John M., Meshinchi, Soheil, Hunger, Stephen P., Gerhard, Daniela S., Zhang, Jinghui

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Etiology of oncogenic fusions in 5,190 childhood cancers and its clinical and therapeutic implication by Liu, Yanling, Klein, Jonathon, Bajpai, Richa, Dong, Li, Tran, Quang, Kolekar, Pandurang, Smith, Jenny L., Ries, Rhonda E., Huang, Benjamin J., Wang, Yi-Cheng, Alonzo, Todd A., Tian, Liqing, Mulder, Heather L., Shaw, Timothy I., Ma, Jing, Walsh, Michael P., Song, Guangchun, Westover, Tamara, Autry, Robert J., Gout, Alexander M., Wheeler, David A., Wan, Shibiao, Wu, Gang, Yang, Jun J., Evans, William E., Loh, Mignon, Easton, John, Zhang, Jinghui, Klco, Jeffery M., Meshinchi, Soheil, Brown, Patrick A., Pruett-Miller, Shondra M., Ma, Xiaotu

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Description of a novel subtype of acute myeloid leukemia defined by recurrent CBFB insertions by Ryland, Georgina L., Umeda, Masayuki, Holmfeldt, Linda, Lehmann, Sören, Herlin, Morten Krogh, Ma, Jing, Khanlari, Mahsa, Rubnitz, Jeffrey E., Ries, Rhonda E., Kosasih, Hansen J., Ekert, Paul G., Goh, Hwee Ngee, Tiong, Ing S., Grimmond, Sean M., Haferlach, Claudia, Day, Ryan B., Ley, Timothy J., Meshinchi, Soheil, Ma, Xiaotu, Blombery, Piers, Klco, Jeffery M.

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Haplo-Insufficiency of RAS Genes Is the Determinant of Outcome in AML by Peplinski, Jack H., Wallace, Logan K., Ries, Rhonda E., Ma, Xiaotu, Kirkey, Danielle C., Meshinchi, Soheil

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Dysregulation of Developmental Transcription Factors in Acute Myeloid Leukemia Predicts Poor Outcome and Impacts Adaptive Immune Pathway Genes by Wallace, Logan K., Peplinski, Jack H., Ries, Rhonda E., Kirkey, Danielle C., Ma, Xiaotu, Meshinchi, Soheil

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A longitudinal single-cell atlas of treatment response in pediatric AML by Lambo, Sander, Trinh, Diane L, Ries, Rhonda E, Jin, Dan, Setiadi, Audi, Ng, Michelle, Leblanc, Veronique G, Loken, Michael R, Brodersen, Lisa E, Dai, Fangyan, Pardo, Laura M, Ma, Xiaotu, Vercauteren, Suzanne M, Meshinchi, Soheil, Marra, Marco A

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Comprehensive molecular and clinical characterization of NUP98 fusions in pediatric acute myeloid leukemia by Bertrums, Eline J M, Smith, Jenny L, Harmon, Lauren, Ries, Rhonda E, Wang, Yi-Cheng J, Alonzo, Todd A, Menssen, Andrew J, Chisholm, Karen M, Leonti, Amanda R, Tarlock, Katherine, Ostronoff, Fabiana, Pogosova-Agadjanyan, Era L, Kaspers, Gertjan J L, Hasle, Henrik, Dworzak, Michael, Walter, Christiane, Muhlegger, Nora, Morerio, Cristina, Pardo, Laura, Hirsch, Betsy, Raimondi, Susana, Cooper, Todd M, Aplenc, Richard, Gamis, Alan S, Kolb, Edward A, Farrar, Jason E, Stirewalt, Derek, Ma, Xiaotu, Shaw, Tim I, Furlan, Scott N, Brodersen, Lisa Eidenschink, Loken, Michael R, Van den Heuvel-Eibrink, Marry M, Zwaan, C Michel, Triche, Timothy J, Goemans, Bianca F, Meshinchi, Soheil

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CREBBP alterations are associated with a poor prognosis in de novo AML by Lamble, Adam J., Hagiwara, Kohei, Gerbing, Robert B., Smith, Jenny L., Kolekar, Pandurang, Ries, Rhonda E., Kolb, Edward A., Alonzo, Todd A., Ma, Xiaotu, Meshinchi, Soheil

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Comprehensive Characterization of Rare Recurrent Mutations in Pediatric AML by Lamble, Adam, Ries, Rhonda E., Peplinski, Jack H., Wallace, Logan K., Kirkey, Danielle C., Ma, Xiaotu, Meshinchi, Soheil

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Integrated Genomic Analysis Identifies UBTF Tandem Duplications as a Recurrent Lesion in Pediatric Acute Myeloid Leukemia by Umeda, Masayuki, Ma, Jing, Huang, Benjamin J, Hagiwara, Kohei, Westover, Tamara, Abdelhamed, Sherif, Barajas, Juan M, Thomas, Melvin E, Walsh, Michael P, Song, Guangchun, Tian, Liqing, Liu, Yanling, Chen, Xiaolong, Kolekar, Pandurang, Tran, Quang, Foy, Scott G, Maciaszek, Jamie L, Kleist, Andrew B, Leonti, Amanda R, Ju, Bengsheng, Easton, John, Wu, Huiyun, Valentine, Virginia, Valentine, Marcus B, Liu, Yen-Chun, Ries, Rhonda E, Smith, Jenny L, Parganas, Evan, Iacobucci, Ilaria, Hiltenbrand, Ryan, Miller, Jonathan, Myers, Jason R, Rampersaud, Evadnie, Rahbarinia, Delaram, Rusch, Michael, Wu, Gang, Inaba, Hiroto, Wang, Yi-Cheng, Alonzo, Todd A, Downing, James R, Mullighan, Charles G, Pounds, Stanley, Babu, M Madan, Zhang, Jinghui, Rubnitz, Jeffrey E, Meshinchi, Soheil, Ma, Xiaotu, Klco, Jeffery M

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Germline Variant Burden Warrants Universal Genetic Testing in Pediatric AML by Harmon, Lauren, Hattig, Zachary S, Huang, Yizhou Peter, Beckford, Caliese, Ma, Xiaotu, Ries, Rhonda E., Meshinchi, Soheil, Godley, Lucy, Triche, Timothy J

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Identifying a Relapse Signature in CBFB-MYH11 Acute Myeloid Leukemia by Peplinski, Jack H, Wallace, Logan K, Ries, Rhonda E, Huang, Benjamin J, Leonti, Amanda R, Kirkey, Danielle C, Ma, Xiaotu, Furlan, Scott N, Meshinchi, Soheil

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Identification of a Relapse Signature in t(8;21) Pediatric AML by Wallace, Logan K, Peplinski, Jack H, Ries, Rhonda E, Huang, Benjamin J, Ma, Xiaotu, Furlan, Scott N, Kirkey, Danielle C, Meshinchi, Soheil

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CSF3R mutations have a high degree of overlap with CEBPA mutations in pediatric AML by Maxson, Julia E., Ries, Rhonda E., Wang, Yi-Cheng, Gerbing, Robert B., Kolb, E.Anders, Thompson, Sarah L., Guidry Auvil, Jaime M., Marra, Marco A., Ma, Yussanne, Zong, Zusheng, Mungall, Andrew J., Moore, Richard, Long, William, Gesuwan, Patee, Davidsen, Tanja M., Hermida, Leandro C., Hughes, Seamus B., Farrar, Jason E., Radich, Jerald P., Smith, Malcolm A., Gerhard, Daniela S., Gamis, Alan S., Alonzo, Todd A., Meshinchi, Soheil

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Integrated Methylation and Transcriptional Landscape and Evolution of Pediatric AML by Huang, Benjamin J, Bolouri, Hamid, Smith, Colin Y., Wang, Jim, Ries, Rhonda E, Conran, Elizabeth, Gamis, Alan S, Aplenc, Richard, Alonzo, Todd A., Ma, Xiaotu, Triche, Timothy Junius, Farrar, Jason E, Meshinchi, Soheil

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Integrative Genome and Transcriptome Sequencing Analysis Indicates Genetic and Epigenetic Dysregulation in DS-AML by Ma, Xiaotu, Ries, Rhonda E, Tran, Quang, Liu, Yanling, Kolekar, Pandurang, Alsallaq, Ramzi, Liang, Zhikai, Shaw, Timothy, Devineni, Meghana, Deslattes Mays, Anne, Lau, Ching, Hitzler, Johann K., Meshinchi, Soheil

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DNMT3A Mutants Are Enriched in NPMc+ AML and Associated with Adverse Outcome in Childhood AML by Ries, Rhonda E, Ma, Xiaotu, Tregnago, Claudia, Alonzo, Todd A., Wang, Jim, Hylkema, Tiffany, Huang, Benjamin J, Torabi, Alireza, Peplinski, Jack H, Wallace, Logan K, Aplenc, Richard, Gamis, Alan S, Tarlock, Katherine, Locatelli, Franco, Pigazzi, Martina, Meshinchi, Soheil

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Pathogenic TP53 mutations Are Associated with a Poor Prognosis in De Novo AML by Lamble, Adam J., Ries, Rhonda E., Dang, Alice, Alonzo, Todd A., Chisholm, Karen, Kolekar, Pandurang, Liu, Yanling, Tran, Quang, Cooper, Todd M., Aplenc, Richard, Gamis, Alan S., Kolb, Edward A., Ma, Xiaotu, Meshinchi, Soheil

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