Search Results - Roche, Daniel B.

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  1. 1
    The FunFOLD2 server for the prediction of protein-ligand interactions

    The FunFOLD2 server for the prediction of protein-ligand interactions by Roche, Daniel B, Buenavista, Maria T, McGuffin, Liam J

    Published in Nucleic acids research
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  2. 2
    FunFOLD: an improved automated method for the prediction of ligand binding residues using 3D models of proteins

    FunFOLD: an improved automated method for the prediction of ligand binding residues using 3D models of proteins by Roche, Daniel B, Tetchner, Stuart J, McGuffin, Liam J

    Published in BMC bioinformatics
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  3. 3
    Improvement of 3D protein models using multiple templates guided by single-template model quality assessment

    Improvement of 3D protein models using multiple templates guided by single-template model quality assessment by BUENAVISTA, Maria T, ROCHE, Daniel B, MCGUFFIN, Liam J

    Published in Bioinformatics
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  4. 4
    Functional analysis of Plasmodium falciparum subpopulations associated with artemisinin resistance in Cambodia

    Functional analysis of Plasmodium falciparum subpopulations associated with artemisinin resistance in Cambodia by Dwivedi, Ankit, Reynes, Christelle, Kuehn, Axel, Roche, Daniel B, Khim, Nimol, Hebrard, Maxim, Milanesi, Sylvain, Rivals, Eric, Frutos, Roger, Menard, Didier, Mamoun, Choukri Ben, Colinge, Jacques, Cornillot, Emmanuel

    Published in Malaria journal
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  5. 5
    Neurotoxicity of a Biopesticide Analog on Zebrafish Larvae at Nanomolar Concentrations

    Neurotoxicity of a Biopesticide Analog on Zebrafish Larvae at Nanomolar Concentrations by Nasri, Ahmed, Valverde, Audrey J, Roche, Daniel B, Desrumaux, Catherine, Clair, Philippe, Beyrem, Hamouda, Chaloin, Laurent, Ghysen, Alain, Perrier, Véronique

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  6. 6
    The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

    The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens by Zhou, Naihui, Jiang, Yuxiang, Bergquist, Timothy R, Lee, Alexandra J, Kacsoh, Balint Z, Crocker, Alex W, Lewis, Kimberley A, Georghiou, George, Nguyen, Huy N, Hamid, Md Nafiz, Davis, Larry, Dogan, Tunca, Atalay, Volkan, Rifaioglu, Ahmet S, Dalkıran, Alperen, Cetin Atalay, Rengul, Zhang, Chengxin, Hurto, Rebecca L, Freddolino, Peter L, Zhang, Yang, Bhat, Prajwal, Supek, Fran, Fernández, José M, Gemovic, Branislava, Perovic, Vladimir R, Davidović, Radoslav S, Sumonja, Neven, Veljkovic, Nevena, Asgari, Ehsaneddin, Mofrad, Mohammad R K, Profiti, Giuseppe, Savojardo, Castrense, Martelli, Pier Luigi, Casadio, Rita, Boecker, Florian, Schoof, Heiko, Kahanda, Indika, Thurlby, Natalie, McHardy, Alice C, Renaux, Alexandre, Saidi, Rabie, Gough, Julian, Freitas, Alex A, Antczak, Magdalena, Fabris, Fabio, Wass, Mark N, Hou, Jie, Cheng, Jianlin, Wang, Zheng, Romero, Alfonso E, Paccanaro, Alberto, Yang, Haixuan, Goldberg, Tatyana, Zhao, Chenguang, Holm, Liisa, Törönen, Petri, Medlar, Alan J, Zosa, Elaine, Borukhov, Itamar, Novikov, Ilya, Wilkins, Angela, Lichtarge, Olivier, Chi, Po-Han, Tseng, Wei-Cheng, Linial, Michal, Rose, Peter W, Dessimoz, Christophe, Vidulin, Vedrana, Dzeroski, Saso, Sillitoe, Ian, Das, Sayoni, Lees, Jonathan Gill, Jones, David T, Wan, Cen, Cozzetto, Domenico, Fa, Rui, Torres, Mateo, Warwick Vesztrocy, Alex, Rodriguez, Jose Manuel, Tress, Michael L, Frasca, Marco, Notaro, Marco, Grossi, Giuliano, Petrini, Alessandro, Re, Matteo, Valentini, Giorgio, Mesiti, Marco, Roche, Daniel B, Reeb, Jonas, Ritchie, David W, Aridhi, Sabeur, Alborzi, Seyed Ziaeddin, Devignes, Marie-Dominique, Koo, Da Chen Emily, Bonneau, Richard, Gligorijević, Vladimir, Barot, Meet, Fang, Hai, Toppo, Stefano, Lavezzo, Enrico

    Published in Genome Biology
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  7. 7
    FunFOLDQA: a quality assessment tool for protein-ligand binding site residue predictions

    FunFOLDQA: a quality assessment tool for protein-ligand binding site residue predictions by Roche, Daniel B, Buenavista, Maria T, McGuffin, Liam J

    Published in PloS one
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  8. 8
    IntFOLD: an integrated server for modelling protein structures and functions from amino acid sequences

    IntFOLD: an integrated server for modelling protein structures and functions from amino acid sequences by McGuffin, Liam J, Atkins, Jennifer D, Salehe, Bajuna R, Shuid, Ahmad N, Roche, Daniel B

    Published in Nucleic acids research
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  9. 9
    The ModFOLD4 server for the quality assessment of 3D protein models

    The ModFOLD4 server for the quality assessment of 3D protein models by McGuffin, Liam J, Buenavista, Maria T, Roche, Daniel B

    Published in Nucleic acids research
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  10. 10
    DisProt 7.0: a major update of the database of disordered proteins

    DisProt 7.0: a major update of the database of disordered proteins by Piovesan, Damiano, Tabaro, Francesco, Mičetić, Ivan, Necci, Marco, Quaglia, Federica, Oldfield, Christopher J, Aspromonte, Maria Cristina, Davey, Norman E, Davidović, Radoslav, Dosztányi, Zsuzsanna, Elofsson, Arne, Gasparini, Alessandra, Hatos, András, Kajava, Andrey V, Kalmar, Lajos, Leonardi, Emanuela, Lazar, Tamas, Macedo-Ribeiro, Sandra, Macossay-Castillo, Mauricio, Meszaros, Attila, Minervini, Giovanni, Murvai, Nikoletta, Pujols, Jordi, Roche, Daniel B, Salladini, Edoardo, Schad, Eva, Schramm, Antoine, Szabo, Beata, Tantos, Agnes, Tonello, Fiorella, Tsirigos, Konstantinos D, Veljković, Nevena, Ventura, Salvador, Vranken, Wim, Warholm, Per, Uversky, Vladimir N, Dunker, A Keith, Longhi, Sonia, Tompa, Peter, Tosatto, Silvio C E

    Published in Nucleic acids research
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  11. 11
    TAPO: A combined method for the identification of tandem repeats in protein structures

    TAPO: A combined method for the identification of tandem repeats in protein structures by Do Viet, Phuong, Roche, Daniel B., Kajava, Andrey V.

    Published in FEBS letters
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  12. 12
    Usage of a dataset of NMR resolved protein structures to test aggregation versus solubility prediction algorithms

    Usage of a dataset of NMR resolved protein structures to test aggregation versus solubility prediction algorithms by Roche, Daniel B., Villain, Etienne, Kajava, Andrey V.

    Published in Protein science
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  13. 13
    Rapid model quality assessment for protein structure predictions using the comparison of multiple models without structural alignments

    Rapid model quality assessment for protein structure predictions using the comparison of multiple models without structural alignments by McGuffin, Liam J., Roche, Daniel B.

    Published in Bioinformatics
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  14. 14
    Accurate template‐based modeling in CASP12 using the IntFOLD4‐TS, ModFOLD6, and ReFOLD methods

    Accurate template‐based modeling in CASP12 using the IntFOLD4‐TS, ModFOLD6, and ReFOLD methods by McGuffin, Liam J., Shuid, Ahmad N., Kempster, Robert, Maghrabi, Ali H.A., Nealon, John O., Salehe, Bajuna R., Atkins, Jennifer D., Roche, Daniel B.

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  15. 15
    Classification of β-hairpin repeat proteins

    Classification of β-hairpin repeat proteins by Roche, Daniel B., Viet, Phuong Do, Bakulina, Anastasia, Hirsh, Layla, Tosatto, Silvio C.E., Kajava, Andrey V.

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  16. 16
    The IntFOLD server: an integrated web resource for protein fold recognition, 3D model quality assessment, intrinsic disorder prediction, domain prediction and ligand binding site prediction

    The IntFOLD server: an integrated web resource for protein fold recognition, 3D model quality assessment, intrinsic disorder prediction, domain prediction and ligand binding site p... by Roche, Daniel B., Buenavista, Maria T., Tetchner, Stuart J., McGuffin, Liam J.

    Published in Nucleic acids research
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  17. 17
    Corrigendum: DisProt 7.0: a major update of the database of disordered proteins

    Corrigendum: DisProt 7.0: a major update of the database of disordered proteins by Piovesan, Damiano, Tabaro, Francesco, Mičetić, Ivan, Necci, Marco, Quaglia, Federica, Oldfield, Christopher J, Aspromonte, Maria Cristina, Davey, Norman E, Davidović, Radoslav, Dosztányi, Zsuzsanna, Elofsson, Arne, Gasparini, Alessandra, Hatos, András, Kajava, Andrey V, Kalmar, Lajos, Leonardi, Emanuela, Lazar, Tamas, Macedo-Ribeiro, Sandra, Macossay-Castillo, Mauricio, Meszaros, Attila, Minervini, Giovanni, Murvai, Nikoletta, Pujols, Jordi, Roche, Daniel B, Salladini, Edoardo, Schad, Eva, Schramm, Antoine, Szabo, Beata, Tantos, Agnes, Tonello, Fiorella, Tsirigos, Konstantinos D, Veljković, Nevena, Ventura, Salvador, Vranken, Wim, Warholm, Per, Uversky, Vladimir N, Dunker, A Keith, Longhi, Sonia, Tompa, Peter, Tosatto, Silvio C E

    Published in Nucleic acids research
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  18. 18
    Automated tertiary structure prediction with accurate local model quality assessment using the intfold-ts method

    Automated tertiary structure prediction with accurate local model quality assessment using the intfold-ts method by McGuffin, Liam J., Roche, Daniel B.

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  19. 19
    The binding site distance test score: a robust method for the assessment of predicted protein binding sites

    The binding site distance test score: a robust method for the assessment of predicted protein binding sites by Roche, Daniel B., Tetchner, Stuart J., McGuffin, Liam J.

    Published in Bioinformatics
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  20. 20
    DisProt 7.0: a major update of the database of disordered proteins

    DisProt 7.0: a major update of the database of disordered proteins by Piovesan, Damiano, Tabaro, Francesco, Mičetić, Ivan, Necci, Marco, Quaglia, Federica, Oldfield, Christopher J., Aspromonte, Maria Cristina, Davey, Norman E., Davidović, Radoslav, Dosztányi, Zsuzsanna, Elofsson, Arne, Gasparini, Alessandra, Hatos, András, Kajava, Andrey V., Kalmar, Lajos, Leonardi, Emanuela, Lazar, Tamas, Macedo-Ribeiro, Sandra, Macossay-Castillo, Mauricio, Meszaros, Attila, Minervini, Giovanni, Murvai, Nikoletta, Pujols, Jordi, Roche, Daniel B., Salladini, Edoardo, Schad, Eva, Schramm, Antoine, Szabo, Beata, Tantos, Agnes, Tonello, Fiorella, Tsirigos, Konstantinos D., Veljković, Nevena, Ventura, Salvador, Vranken, Wim, Warholm, Per, Uversky, Vladimir N., Dunker, A. Keith, Longhi, Sonia, Tompa, Peter, Tosatto, Silvio C.E.

    Published in Nucleic acids research
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