Numerical Approach to Spatial Deterministic-Stochastic Models Arising in Cell Biology by Schaff, James C, Gao, Fei, Li, Ye, Novak, Igor L, Slepchenko, Boris M

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The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2 by Hucka, Michael, Bergmann, Frank T, Chaouiya, Claudine, Dräger, Andreas, Hoops, Stefan, Keating, Sarah M, König, Matthias, Novère, Nicolas Le, Myers, Chris J, Olivier, Brett G, Sahle, Sven, Schaff, James C, Sheriff, Rahuman, Smith, Lucian P, Waltemath, Dagmar, Wilkinson, Darren J, Zhang, Fengkai

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Virtual cell modeling and simulation software by Blinov, Michael L., Moraru, Ion I., Schaff, James C., Loew, Leslie M.

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Cell Shape and Negative Links in Regulatory Motifs Together Control Spatial Information Flow in Signaling Networks by Neves, Susana R., Tsokas, Panayiotis, Sarkar, Anamika, Grace, Elizabeth A., Rangamani, Padmini, Taubenfeld, Stephen M., Alberini, Cristina M., Schaff, James C., Blitzer, Robert D., Moraru, Ion I., Iyengar, Ravi

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Compartmental and Spatial Rule-Based Modeling with Virtual Cell by Blinov, Michael L., Schaff, James C., Vasilescu, Dan, Moraru, Ion I., Bloom, Judy E., Loew, Leslie M.

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The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core by Hucka, Michael, Bergmann, Frank T., Dräger, Andreas, Hoops, Stefan, Keating, Sarah M., Le Novère, Nicolas, Myers, Chris J., Olivier, Brett G., Sahle, Sven, Schaff, James C., Smith, Lucian P., Waltemath, Dagmar, Wilkinson, Darren J.

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Rule-based modeling with Virtual Cell by Schaff, James C, Vasilescu, Dan, Moraru, Ion I, Loew, Leslie M, Blinov, Michael L

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The Virtual Cell: a software environment for computational cell biology by Loew, Leslie M., Schaff, James C.

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SBML level 3 package: spatial processes, version 1, release 1 by Schaff, James C., Lakshminarayana, Anuradha, Murphy, Robert F., Bergmann, Frank T., Funahashi, Akira, Sullivan, Devin P., Smith, Lucian P.

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Quantitative cell biology with the Virtual Cell by Slepchenko, Boris M., Schaff, James C., Macara, Ian, Loew, Leslie M.

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Virtual Cell: computational tools for modeling in cell biology by Resasco, Diana C., Gao, Fei, Morgan, Frank, Novak, Igor L., Schaff, James C., Slepchenko, Boris M.

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Diffusion on a curved surface coupled to diffusion in the volume: Application to cell biology by Novak, Igor L., Gao, Fei, Choi, Yung-Sze, Resasco, Diana, Schaff, James C., Slepchenko, Boris M.

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The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core by Hucka, Michael, Bergmann, Frank T., Hoops, Stefan, Keating, Sarah M., Sahle, Sven, Schaff, James C., Smith, Lucian P., Wilkinson, Darren J.

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A systems pharmacology model for gene therapy in sickle cell disease by Zheng, Bo, Wille, Lucia, Peppel, Karsten, Hagen, David, Matteson, Andrew, Ahlers, Jeffrey, Schaff, James, Hua, Fei, Yuraszeck, Theresa, Cobbina, Enoch, Apgar, Joshua F., Burke, John M., Roberts, John, Das, Raibatak

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Pathway Commons at virtual cell: use of pathway data for mathematical modeling by Blinov, Michael L, Schaff, James C, Ruebenacker, Oliver, Wei, Xintao, Vasilescu, Dan, Gao, Fei, Morgan, Frank, Ye, Li, Lakshminarayana, Anuradha, Moraru, Ion I, Loew, Leslie M

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Virtual NEURON: a strategy for merged biochemical and electrophysiological modeling by Brown, Sherry-Ann, Moraru, Ion I., Schaff, James C., Loew, Leslie M.

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Systems Analysis of Ran Transport by Smith, Alicia E., Slepchenko, Boris M., Schaff, James C., Loew, Leslie M., Macara, Ian G.

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Reaction-diffusion modeling in the NEURON simulator by McDougal, Robert A, Skolnick, Yosef, Schaff, James C, Lytton, William W, Hines, Michael L

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Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions by Hucka, Michael, Bergmann, Frank T., Dräger, Andreas, Hoops, Stefan, Keating, Sarah M., Le Novère, Nicolas, Myers, Chris J., Olivier, Brett G., Sahle, Sven, Schaff, James C., Smith, Lucian P., Waltemath, Dagmar, Wilkinson, Darren J.

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The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core by Hucka, Michael, Bergmann, Frank T., Dräger, Andreas, Hoops, Stefan, Keating, Sarah M., Le Novère, Nicolas, Myers, Chris J., Olivier, Brett G., Sahle, Sven, Schaff, James C., Smith, Lucian P., Waltemath, Dagmar, Wilkinson, Darren J.

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