A comprehensive catalogue of somatic mutations from a human cancer genome by Pleasance, Erin D., Cheetham, R. Keira, Stephens, Philip J., McBride, David J., Humphray, Sean J., Greenman, Chris D., Varela, Ignacio, Lin, Meng-Lay, Ordóñez, Gonzalo R., Bignell, Graham R., Ye, Kai, Alipaz, Julie, Bauer, Markus J., Beare, David, Butler, Adam, Carter, Richard J., Chen, Lina, Cox, Anthony J., Edkins, Sarah, Kokko-Gonzales, Paula I., Gormley, Niall A., Grocock, Russell J., Haudenschild, Christian D., Hims, Matthew M., James, Terena, Jia, Mingming, Kingsbury, Zoya, Leroy, Catherine, Marshall, John, Menzies, Andrew, Mudie, Laura J., Ning, Zemin, Royce, Tom, Schulz-Trieglaff, Ole B., Spiridou, Anastassia, Stebbings, Lucy A., Szajkowski, Lukasz, Teague, Jon, Williamson, David, Chin, Lynda, Ross, Mark T., Campbell, Peter J., Bentley, David R., Futreal, P. Andrew, Stratton, Michael R.

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metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences by Ander, Christina, Schulz-Trieglaff, Ole B, Stoye, Jens, Cox, Anthony J

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Genome Sequencing and Analysis of the Tasmanian Devil and Its Transmissible Cancer by Murchison, Elizabeth P., Schulz-Trieglaff, Ole B., Ning, Zemin, Alexandrov, Ludmil B., Bauer, Markus J., Fu, Beiyuan, Hims, Matthew, Ding, Zhihao, Ivakhno, Sergii, Stewart, Caitlin, Ng, Bee Ling, Wong, Wendy, Aken, Bronwen, White, Simon, Alsop, Amber, Becq, Jennifer, Bignell, Graham R., Cheetham, R. Keira, Cheng, William, Connor, Thomas R., Cox, Anthony J., Feng, Zhi-Ping, Gu, Yong, Grocock, Russell J., Harris, Simon R., Khrebtukova, Irina, Kingsbury, Zoya, Kowarsky, Mark, Kreiss, Alexandre, Luo, Shujun, Marshall, John, McBride, David J., Murray, Lisa, Pearse, Anne-Maree, Raine, Keiran, Rasolonjatovo, Isabelle, Shaw, Richard, Tedder, Philip, Tregidgo, Carolyn, Vilella, Albert J., Wedge, David C., Woods, Gregory M., Gormley, Niall, Humphray, Sean, Schroth, Gary, Smith, Geoffrey, Hall, Kevin, Searle, Stephen M.J., Carter, Nigel P., Papenfuss, Anthony T., Futreal, P. Andrew, Campbell, Peter J., Yang, Fengtang, Bentley, David R., Evers, Dirk J., Stratton, Michael R.

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NxRepair: Error correction in de novo sequence assembly using Nextera mate pairs by Murphy, Rebecca R, O'Connell, Jared M, Cox, Anthony J, Schulz-Trieglaff, Ole B

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Comparing DNA sequence collections by direct comparison of compressed text indexes by Cox, Anthony J, Jakobi, Tobias, Rosone, Giovanna, Schulz-Trieglaff, Ole B

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Efficient de novo assembly of single-cell bacterial genomes from short-read data sets by Chitsaz, Hamidreza, Yee-Greenbaum, Joyclyn L, Tesler, Glenn, Lombardo, Mary-Jane, Dupont, Christopher L, Badger, Jonathan H, Novotny, Mark, Rusch, Douglas B, Fraser, Louise J, Gormley, Niall A, Schulz-Trieglaff, Ole, Smith, Geoffrey P, Evers, Dirk J, Pevzner, Pavel A, Lasken, Roger S

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De novo assembly of bacterial genomes from single cells by Chitsaz, Hamidreza, Yee-Greenbaum, Joyclyn L., Tesler, Glenn, Lombardo, Mary-Jane, Dupont, Christopher L., Badger, Jonathan H., Novotny, Mark, Rusch, Douglas B., Fraser, Louise J., Gormley, Niall A., Schulz-Trieglaff, Ole, Smith, Geoffrey P., Evers, Dirk J., Pevzner, Pavel A., Lasken, Roger S.

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