Transcription Factor Cooperativity in Early Adipogenic Hotspots and Super-Enhancers by Siersbæk, Rasmus, Rabiee, Atefeh, Nielsen, Ronni, Sidoli, Simone, Traynor, Sofie, Loft, Anne, Poulsen, Lars La Cour, Rogowska-Wrzesinska, Adelina, Jensen, Ole N., Mandrup, Susanne

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Quantitation of Single and Combinatorial Histone Modifications by Integrated Chromatography of Bottom-up Peptides and Middle-down Polypeptide Tails by Janssen, Kevin A., Coradin, Mariel, Lu, Congcong, Sidoli, Simone, Garcia, Benjamin A.

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Proteomics in chromatin biology and epigenetics: Elucidation of post-translational modifications of histone proteins by mass spectrometry by Sidoli, Simone, Cheng, Lei, Jensen, Ole N.

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Defining heterochromatin in C. elegans through genome-wide analysis of the heterochromatin protein 1 homolog HPL-2 by Garrigues, Jacob M, Sidoli, Simone, Garcia, Benjamin A, Strome, Susan

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Bottom-Up and Middle-Down Proteomics Have Comparable Accuracies in Defining Histone Post-Translational Modification Relative Abundance and Stoichiometry by Sidoli, Simone, Lin, Shu, Karch, Kelly R, Garcia, Benjamin A

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Epigenomic Reordering Induced by Polycomb Loss Drives Oncogenesis but Leads to Therapeutic Vulnerabilities in Malignant Peripheral Nerve Sheath Tumors by Wojcik, John B, Marchione, Dylan M, Sidoli, Simone, Djedid, Anissa, Lisby, Amanda, Majewski, Jacek, Garcia, Benjamin A

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Identification of Nidogen 1 as a lung metastasis protein through secretome analysis by Alečković, Maša, Wei, Yong, LeRoy, Gary, Sidoli, Simone, Liu, Daniel D, Garcia, Benjamin A, Kang, Yibin

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Quantitative chromatin proteomics reveals a dynamic histone post-translational modification landscape that defines asexual and sexual Plasmodium falciparum parasites by Coetzee, Nanika, Sidoli, Simone, van Biljon, Riëtte, Painter, Heather, Llinás, Manuel, Garcia, Benjamin A., Birkholtz, Lyn-Marie

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Loss of HP1 causes depletion of H3K27me3 from facultative heterochromatin and gain of H3K27me2 at constitutive heterochromatin by Jamieson, Kirsty, Wiles, Elizabeth T, McNaught, Kevin J, Sidoli, Simone, Leggett, Neena, Shao, Yanchun, Garcia, Benjamin A, Selker, Eric U

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Investigation of reversible histone acetylation and dynamics in gene expression regulation using 3D liver spheroid model by Stransky, Stephanie, Cutler, Ronald, Aguilan, Jennifer, Nieves, Edward, Sidoli, Simone

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Characterization of the intracellular neurexin interactome by in vivo proximity ligation suggests its involvement in presynaptic actin assembly by Schaan Profes, Marcos, Tiroumalechetty, Araven, Patel, Neel, Lauar, Stephanie S, Sidoli, Simone, Kurshan, Peri T

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VAL genes regulate vegetative phase change via miR156-dependent and independent mechanisms by Fouracre, Jim P, He, Jia, Chen, Victoria J, Sidoli, Simone, Poethig, R. Scott

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An HDAC3-PROX1 corepressor module acts on HNF4α to control hepatic triglycerides by Armour, Sean M., Remsberg, Jarrett R., Damle, Manashree, Sidoli, Simone, Ho, Wesley Y., Li, Zhenghui, Garcia, Benjamin A., Lazar, Mitchell A.

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Histone H4 acetylation and the epigenetic reader Brd4 are critical regulators of pluripotency in embryonic stem cells by Gonzales-Cope, Michelle, Sidoli, Simone, Bhanu, Natarajan V, Won, Kyoung-Jae, Garcia, Benjamin A

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Protective neutralizing antibodies from human survivors of Crimean-Congo hemorrhagic fever by Fels, J. Maximilian, Maurer, Daniel P., Herbert, Andrew S., Wirchnianski, Ariel S., Vergnolle, Olivia, Cross, Robert W., Abelson, Dafna M., Moyer, Crystal L., Mishra, Akaash K., Aguilan, Jennifer T., Kuehne, Ana I., Pauli, Noel T., Bakken, Russell R., Nyakatura, Elisabeth K., Hellert, Jan, Quevedo, Gregory, Lobel, Leslie, Balinandi, Stephen, Lutwama, Julius J., Zeitlin, Larry, Geisbert, Thomas W., Rey, Felix A., Sidoli, Simone, McLellan, Jason S., Lai, Jonathan R., Bornholdt, Zachary A., Dye, John M., Walker, Laura M., Chandran, Kartik

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Proteome-wide acetylation dynamics in human cells by Kori, Yekaterina, Sidoli, Simone, Yuan, Zuo-Fei, Lund, Peder J., Zhao, Xiaolu, Garcia, Benjamin A.

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Histone H3K23-specific acetylation by MORF is coupled to H3K14 acylation by Klein, Brianna J., Jang, Suk Min, Lachance, Catherine, Mi, Wenyi, Lyu, Jie, Sakuraba, Shun, Krajewski, Krzysztof, Wang, Wesley W., Sidoli, Simone, Liu, Jiuyang, Zhang, Yi, Wang, Xiaolu, Warfield, Becka M., Kueh, Andrew J., Voss, Anne K., Thomas, Tim, Garcia, Benjamin A., Liu, Wenshe R., Strahl, Brian D., Kono, Hidetoshi, Li, Wei, Shi, Xiaobing, Côté, Jacques, Kutateladze, Tatiana G.

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One-shot analysis of translated mammalian lncRNAs with AHARIBO by Minati, Luca, Firrito, Claudia, Del Piano, Alessia, Peretti, Alberto, Sidoli, Simone, Peroni, Daniele, Belli, Romina, Gandolfi, Francesco, Romanel, Alessandro, Bernabo, Paola, Zasso, Jacopo, Quattrone, Alessandro, Guella, Graziano, Lauria, Fabio, Viero, Gabriella, Clamer, Massimiliano

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Graphical Interpretation and Analysis of Proteins and their Ontologies (GiaPronto): A One-Click Graph Visualization Software for Proteomics Data Sets by Weiner, Amber K., Sidoli, Simone, Diskin, Sharon J., Garcia, Benjamin A.

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Involution of brown adipose tissue through a Syntaxin 4 dependent pyroptosis pathway by Yu, Xiaofan, Benitez, Gabrielle, Wei, Peter Tszki, Krylova, Sofia V., Song, Ziyi, Liu, Li, Zhang, Meifan, Xiaoli, Alus M., Wei, Henna, Chen, Fenfen, Sidoli, Simone, Yang, Fajun, Shinoda, Kosaku, Pessin, Jeffrey E., Feng, Daorong

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