DNA methylation and hydroxymethylation analysis using a high throughput and low bias direct injection mass spectrometry platform by Sun, Yan, Stransky, Stephanie, Aguilan, Jennifer, Brenowitz, Michael, Sidoli, Simone

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Author Correction: Long-term behavioral and cell-type-specific molecular effects of early life stress are mediated by H3K79me2 dynamics in medium spiny neurons by Kronman, Hope, Torres-Berrío, Angélica, Sidoli, Simone, Issler, Orna, Godino, Arthur, Ramakrishnan, Aarthi, Mews, Philipp, Lardner, Casey K., Parise, Eric M., Walker, Deena M., van der Zee, Yentl Y., Browne, Caleb J., Boyce, Brittany F., Neve, Rachael, Garcia, Benjamin A., Shen, Li, Peña, Catherine J., Nestler, Eric J.

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Methamphetamine Dysregulates Macrophage Functions and Autophagy to Mediate HIV Neuropathogenesis by Barbaro, John M, Sidoli, Simone, Cuervo, Ana Maria, Berman, Joan W

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Coordination between TGF-β cellular signaling and epigenetic regulation during epithelial to mesenchymal transition by Lu, Congcong, Sidoli, Simone, Kulej, Katarzyna, Ross, Karen, Wu, Cathy H, Garcia, Benjamin A

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Metabolic labeling in middle-down proteomics allows for investigation of the dynamics of the histone code by Sidoli, Simone, Lu, Congcong, Coradin, Mariel, Wang, Xiaoshi, Karch, Kelly R, Ruminowicz, Chrystian, Garcia, Benjamin A

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A Workflow for Ultra-rapid Analysis of Histone Post-translational Modifications with Direct-injection Mass Spectrometry by Bhanu, Natarajan V, Sidoli, Simone, Garcia, Benjamin A

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CHROMATIN STATE AND MODIFICATIONS IN AGING by Sidoli, Simone

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Mass Spectrometry to Study Chromatin Compaction by Stransky, Stephanie, Aguilan, Jennifer, Lachowicz, Jake, Madrid-Aliste, Carlos, Nieves, Edward, Sidoli, Simone

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Drawbacks in the use of unconventional hydrophobic anhydrides for histone derivatization in bottom-up proteomics PTM analysis by Sidoli, Simone, Yuan, Zuo-Fei, Lin, Shu, Karch, Kelly, Wang, Xiaoshi, Bhanu, Natarajan, Arnaudo, Anna M., Britton, Laura-Mae, Cao, Xing-Jun, Gonzales-Cope, Michelle, Han, Yumiao, Liu, Shichong, Molden, Rosalynn C., Wein, Samuel, Afjehi-Sadat, Leila, Garcia, Benjamin A.

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Antibody attributes, Fc receptor expression, gestation and maternal SARS-CoV-2 infection modulate HSV IgG placental transfer by Mahant, Aakash Mahant, Trejo, Fatima Estrada, Aguilan, Jennifer T., Sidoli, Simone, Permar, Sallie R., Herold, Betsy C.

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A Key Silencing Histone Mark on Chromatin Is Lost When Colorectal Adenocarcinoma Cells Are Depleted of Methionine by Methionine γ-Lyase by Raboni, Samanta, Montalbano, Serena, Stransky, Stephanie, Garcia, Benjamin A, Buschini, Annamaria, Bettati, Stefano, Sidoli, Simone, Mozzarelli, Andrea

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White adipose remodeling during browning in mice involves YBX1 to drive thermogenic commitment by Rabiee, Atefeh, Plucińska, Kaja, Isidor, Marie Sophie, Brown, Erin Louise, Tozzi, Marco, Sidoli, Simone, Petersen, Patricia Stephanie S., Agueda-Oyarzabal, Marina, Torsetnes, Silje Bøen, Chehabi, Galal Nazih, Lundh, Morten, Altıntaş, Ali, Barrès, Romain, Jensen, Ole Nørregaard, Gerhart-Hines, Zachary, Emanuelli, Brice

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Independent transcriptomic and proteomic regulation by type I and II protein arginine methyltransferases by Maron, Maxim I., Lehman, Stephanie M., Gayatri, Sitaram, DeAngelo, Joseph D., Hegde, Subray, Lorton, Benjamin M., Sun, Yan, Bai, Dina L., Sidoli, Simone, Gupta, Varun, Marunde, Matthew R., Bone, James R., Sun, Zu-Wen, Bedford, Mark T., Shabanowitz, Jeffrey, Chen, Hongshan, Hunt, Donald F., Shechter, David

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210 Antibody function, antigenic target and glycans determine the transfer of herpes simplex virus (HSV) antibodies (Abs) from mothers to newborns and transfer is altered by SARS-C... by Mahant Mahant, Aakash, Estrada Trejo, Fatima A., Aguilan, Jennifer T, Sidoli, Simone, Herold, Betsy C.

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TMEM106B Puncta Is Increased in Multiple Sclerosis Plaques, and Reduced Protein in Mice Results in Delayed Lipid Clearance Following CNS Injury by Shafit-Zagardo, Bridget, Sidoli, Simone, Goldman, James E, DuBois, Juwen C, Corboy, John R, Strittmatter, Stephen M, Guzik, Hillary, Edema, Ukuemi, Arackal, Anita G, Botbol, Yair M, Merheb, Emilio, Nagra, Rashed M, Graff, Sarah

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The role of histone H3 lysine demethylases in glioblastoma by Young, Dejauwne, Guha, Chandan, Sidoli, Simone

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Analysis of the Effect of Intestinal Ischemia and Reperfusion on the Rat Neutrophils Proteome by Tahir, Muhammad, Arshid, Samina, Fontes, Belchor, Castro, Mariana S, Luz, Isabelle S, Botelho, Katyelle L R, Sidoli, Simone, Schwämmle, Veit, Roepstorff, Peter, Fontes, Wagner

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Linking Aging to Cancer: The Role of Chromatin Biology by Corveleyn, Laura, Sen, Payel, Adams, Peter, Sidoli, Simone

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Guide for protein fold change and p-value calculation for non-experts in proteomics by Aguilan, Jennifer T, Kulej, Katarzyna, Sidoli, Simone

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PR-DUB maintains the expression of critical genes through FOXK1/2- and ASXL1/2/3-dependent recruitment to chromatin and H2AK119ub1 deubiquitination by Kolovos, Petros, Nishimura, Koutarou, Sankar, Aditya, Sidoli, Simone, Cloos, Paul A, Helin, Kristian, Christensen, Jesper

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