ZBED6, a novel transcription factor derived from a domesticated DNA transposon regulates IGF2 expression and muscle growth by Markljung, Ellen, Jiang, Lin, Jaffe, Jacob D, Mikkelsen, Tarjei S, Wallerman, Ola, Larhammar, Martin, Zhang, Xiaolan, Wang, Li, Saenz-Vash, Veronica, Gnirke, Andreas, Lindroth, Anders M, Barrés, Romain, Yan, Jie, Strömberg, Sara, De, Sachinandan, Pontén, Fredrik, Lander, Eric S, Carr, Steven A, Zierath, Juleen R, Kullander, Klas, Wadelius, Claes, Lindblad-Toh, Kerstin, Andersson, Göran, Hjälm, Göran, Andersson, Leif

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mSin1 Is Necessary for Akt/PKB Phosphorylation, and Its Isoforms Define Three Distinct mTORC2s by Frias, Maria A., Thoreen, Carson C., Jaffe, Jacob D., Schroder, Wayne, Sculley, Tom, Carr, Steven A., Sabatini, David M.

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Quantification of Cardiovascular Biomarkers in Patient Plasma by Targeted Mass Spectrometry and Stable Isotope Dilution by Keshishian, Hasmik, Addona, Terri, Burgess, Michael, Mani, D.R., Shi, Xu, Kuhn, Eric, Sabatine, Marc S., Gerszten, Robert E., Carr, Steven A.

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Anti-apoptotic Protein BIRC5 Maintains Survival of HIV-1-Infected CD4+ T Cells by Kuo, Hsiao-Hsuan, Ahmad, Rushdy, Lee, Guinevere Q., Gao, Ce, Chen, Hsiao-Rong, Ouyang, Zhengyu, Szucs, Matthew J., Kim, Dhohyung, Tsibris, Athe, Chun, Tae-Wook, Battivelli, Emilie, Verdin, Eric, Rosenberg, Eric S., Carr, Steven A., Yu, Xu G., Lichterfeld, Mathias

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Profiling SARS-CoV-2 HLA-I peptidome reveals T cell epitopes from out-of-frame ORFs by Weingarten-Gabbay, Shira, Klaeger, Susan, Sarkizova, Siranush, Pearlman, Leah R., Chen, Da-Yuan, Gallagher, Kathleen M.E., Bauer, Matthew R., Taylor, Hannah B., Dunn, W. Augustine, Tarr, Christina, Sidney, John, Rachimi, Suzanna, Conway, Hasahn L., Katsis, Katelin, Wang, Yuntong, Leistritz-Edwards, Del, Durkin, Melissa R., Tomkins-Tinch, Christopher H., Finkel, Yaara, Nachshon, Aharon, Gentili, Matteo, Rivera, Keith D., Carulli, Isabel P., Chea, Vipheaviny A., Chandrashekar, Abishek, Bozkus, Cansu Cimen, Carrington, Mary, Lavin-Parsons, Kendall, Parry, Blair, Lilley, Brendan, Lodenstein, Carl, McKaig, Brenna, Charland, Nicole, Khanna, Hargun, Margolin, Justin, Gonye, Anna, Gushterova, Irena, Lasalle, Tom, Sharma, Nihaarika, Russo, Brian C., Rojas-Lopez, Maricarmen, Sade-Feldman, Moshe, Manakongtreecheep, Kasidet, Tantivit, Jessica, Fisher Thomas, Molly, Bhardwaj, Nina, Barouch, Dan H., Sette, Alessandro, Maus, Marcela V., Rice, Charles M., Clauser, Karl R., Keskin, Derin B., Pregibon, Daniel C., Hacohen, Nir, Carr, Steven A., Abelin, Jennifer G., Saeed, Mohsan, Sabeti, Pardis C.

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The Connectivity Map: Using Gene-Expression Signatures to Connect Small Molecules, Genes, and Disease by Lamb, Justin, Crawford, Emily D., Peck, David, Modell, Joshua W., Blat, Irene C., Wrobel, Matthew J., Lerner, Jim, Brunet, Jean-Philippe, Subramanian, Aravind, Ross, Kenneth N., Reich, Michael, Hieronymus, Haley, Wei, Guo, Armstrong, Scott A., Haggarty, Stephen J., Clemons, Paul A., Wei, Ru, Carr, Steven A., Lander, Eric S., Golub, Todd R.

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Lso2 is a conserved ribosome-bound protein required for translational recovery in yeast by Wang, Yinuo J, Vaidyanathan, Pavanapuresan P, Rojas-Duran, Maria F, Udeshi, Namrata D, Bartoli, Kristen M, Carr, Steven A, Gilbert, Wendy V

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High-Resolution Mapping Reveals a Conserved, Widespread, Dynamic mRNA Methylation Program in Yeast Meiosis by Schwartz, Schraga, Agarwala, Sudeep D., Mumbach, Maxwell R., Jovanovic, Marko, Mertins, Philipp, Shishkin, Alexander, Tabach, Yuval, Mikkelsen, Tarjei S., Satija, Rahul, Ruvkun, Gary, Carr, Steven A., Lander, Eric S., Fink, Gerald R., Regev, Aviv

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Transcription factor Acj6 controls dendrite targeting via a combinatorial cell-surface code by Xie, Qijing, Li, Jiefu, Li, Hongjie, Udeshi, Namrata D, Svinkina, Tanya, Orlin, Daniel, Kohani, Sayeh, Guajardo, Ricardo, Mani, D R, Xu, Chuanyun, Li, Tongchao, Han, Shuo, Wei, Wei, Shuster, S Andrew, Luginbuhl, David J, Quake, Stephen R, Murthy, Swetha E, Ting, Alice Y, Carr, Steven A, Luo, Liqun

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Proteomics, Post-translational Modifications, and Integrative Analyses Reveal Molecular Heterogeneity within Medulloblastoma Subgroups by Archer, Tenley C., Ehrenberger, Tobias, Mundt, Filip, Gold, Maxwell P., Krug, Karsten, Mah, Clarence K., Mahoney, Elizabeth L., Daniel, Colin J., LeNail, Alexander, Ramamoorthy, Divya, Mertins, Philipp, Mani, D.R., Zhang, Hailei, Gillette, Michael A., Clauser, Karl, Noble, Michael, Tang, Lauren C., Pierre-François, Jessica, Silterra, Jacob, Jensen, James, Tamayo, Pablo, Korshunov, Andrey, Pfister, Stefan M., Kool, Marcel, Northcott, Paul A., Sears, Rosalie C., Lipton, Jonathan O., Carr, Steven A., Mesirov, Jill P., Pomeroy, Scott L., Fraenkel, Ernest

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Methods for Quantification of in vivo Changes in Protein Ubiquitination following Proteasome and Deubiquitinase Inhibition by Udeshi, Namrata D., Mani, D.R., Eisenhaure, Thomas, Mertins, Philipp, Jaffe, Jacob D., Clauser, Karl R., Hacohen, Nir, Carr, Steven A.

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Aptamer-Based Proteomic Profiling Reveals Novel Candidate Biomarkers and Pathways in Cardiovascular Disease by Ngo, Debby, Sinha, Sumita, Shen, Dongxiao, Kuhn, Eric W, Keyes, Michelle J, Shi, Xu, Benson, Mark D, O’Sullivan, John F, Keshishian, Hasmik, Farrell, Laurie A, Fifer, Michael A, Vasan, Ramachandran S, Sabatine, Marc S, Larson, Martin G, Carr, Steven A, Wang, Thomas J, Gerszten, Robert E

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Cohesin mutations alter DNA damage repair and chromatin structure and create therapeutic vulnerabilities in MDS/AML by Tothova, Zuzana, Valton, Anne-Laure, Gorelov, Rebecca A, Vallurupalli, Mounica, Krill-Burger, John M, Holmes, Amie, Landers, Catherine C, Haydu, J Erika, Malolepsza, Edyta, Hartigan, Christina, Donahue, Melanie, Popova, Katerina D, Koochaki, Sebastian, Venev, Sergey V, Rivera, Jeanne, Chen, Edwin, Lage, Kasper, Schenone, Monica, D'Andrea, Alan D, Carr, Steven A, Morgan, Elizabeth A, Dekker, Job, Ebert, Benjamin L

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Patterns of substrate affinity, competition, and degradation kinetics underlie biological activity of thalidomide analogs by Sperling, Adam S., Burgess, Michael, Keshishian, Hasmik, Gasser, Jessica A., Bhatt, Shruti, Jan, Max, Słabicki, Mikołaj, Sellar, Rob S., Fink, Emma C., Miller, Peter G., Liddicoat, Brian J., Sievers, Quinlan L., Sharma, Rohan, Adams, Dylan N., Olesinski, Elyse A., Fulciniti, Mariateresa, Udeshi, Namrata D., Kuhn, Eric, Letai, Anthony, Munshi, Nikhil C., Carr, Steven A., Ebert, Benjamin L.

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Targeted Peptide Measurements in Biology and Medicine: Best Practices for Mass Spectrometry-based Assay Development Using a Fit-for-Purpose Approach by Carr, Steven A., Abbatiello, Susan E., Ackermann, Bradley L., Borchers, Christoph, Domon, Bruno, Deutsch, Eric W., Grant, Russell P., Hoofnagle, Andrew N., Hüttenhain, Ruth, Koomen, John M., Liebler, Daniel C., Liu, Tao, MacLean, Brendan, Mani, DR, Mansfield, Elizabeth, Neubert, Hendrik, Paulovich, Amanda G., Reiter, Lukas, Vitek, Olga, Aebersold, Ruedi, Anderson, Leigh, Bethem, Robert, Blonder, Josip, Boja, Emily, Botelho, Julianne, Boyne, Michael, Bradshaw, Ralph A., Burlingame, Alma L., Chan, Daniel, Keshishian, Hasmik, Kuhn, Eric, Kinsinger, Christopher, Lee, Jerry S.H., Lee, Sang-Won, Moritz, Robert, Oses-Prieto, Juan, Rifai, Nader, Ritchie, James, Rodriguez, Henry, Srinivas, Pothur R., Townsend, R. Reid, Van Eyk, Jennifer, Whiteley, Gordon, Wiita, Arun, Weintraub, Susan

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Dual protease type XIII/pepsin digestion offers superior resolution and overlap for the analysis of histone tails by HX-MS by Mullahoo, James, Zhang, Terry, Clauser, Karl, Carr, Steven A., Jaffe, Jacob D., Papanastasiou, Malvina

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Simplified and Efficient Quantification of Low-abundance Proteins at Very High Multiplex via Targeted Mass Spectrometry by Burgess, Michael W., Keshishian, Hasmik, Mani, D.R., Gillette, Michael A., Carr, Steven A.

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Reduced-representation Phosphosignatures Measured by Quantitative Targeted MS Capture Cellular States and Enable Large-scale Comparison of Drug-induced Phenotypes by Abelin, Jennifer G., Patel, Jinal, Lu, Xiaodong, Feeney, Caitlin M., Fagbami, Lola, Creech, Amanda L., Hu, Roger, Lam, Daniel, Davison, Desiree, Pino, Lindsay, Qiao, Jana W., Kuhn, Eric, Officer, Adam, Li, Jianxue, Abbatiello, Susan, Subramanian, Aravind, Sidman, Richard, Snyder, Evan, Carr, Steven A., Jaffe, Jacob D.

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CITED4 Protects Against Adverse Remodeling in Response to Physiological and Pathological Stress by Lerchenmüller, Carolin, Rabolli, Charles P., Yeri, Ashish, Kitchen, Robert, Salvador, Ane M., Liu, Laura X., Ziegler, Olivia, Danielson, Kirsty, Platt, Colin, Shah, Ravi, Damilano, Federico, Kundu, Piyusha, Riechert, Eva, Katus, Hugo A., Saffitz, Jeffrey E., Keshishian, Hasmik, Carr, Steven A., Bezzerides, Vassilios J., Das, Saumya, Rosenzweig, Anthony

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Functional analysis of receptor tyrosine kinase mutations in lung cancer identifies oncogenic extracellular domain mutations of ERBB2 by Greulich, Heidi, Kaplan, Bethany, Mertins, Philipp, Chen, Tzu-Hsiu, Tanaka, Kumiko E, Yun, Cai-Hong, Zhang, Xiaohong, Lee, Se-Hoon, Cho, Jeonghee, Ambrogio, Lauren, Liao, Rachel, Imielinski, Marcin, Banerji, Shantanu, Berger, Alice H, Lawrence, Michael S, Zhang, Jinghui, Pho, Nam H, Walker, Sarah R, Winckler, Wendy, Getz, Gad, Frank, David, Hahn, William C, Eck, Michael J, Mani, D. R, Jaffe, Jacob D, Carr, Steven A, Wong, Kwok-Kin, Meyerson, Matthew

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