Extremotolerant tardigrade genome and improved radiotolerance of human cultured cells by tardigrade-unique protein by Hashimoto, Takuma, Horikawa, Daiki D., Saito, Yuki, Kuwahara, Hirokazu, Kozuka-Hata, Hiroko, Shin-I, Tadasu, Minakuchi, Yohei, Ohishi, Kazuko, Motoyama, Ayuko, Aizu, Tomoyuki, Enomoto, Atsushi, Kondo, Koyuki, Tanaka, Sae, Hara, Yuichiro, Koshikawa, Shigeyuki, Sagara, Hiroshi, Miura, Toru, Yokobori, Shin-ichi, Miyagawa, Kiyoshi, Suzuki, Yutaka, Kubo, Takeo, Oyama, Masaaki, Kohara, Yuji, Fujiyama, Asao, Arakawa, Kazuharu, Katayama, Toshiaki, Toyoda, Atsushi, Kunieda, Takekazu

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Novel mitochondria-targeted heat-soluble proteins identified in the anhydrobiotic Tardigrade improve osmotic tolerance of human cells by Tanaka, Sae, Tanaka, Junko, Miwa, Yoshihiro, Horikawa, Daiki D, Katayama, Toshiaki, Arakawa, Kazuharu, Toyoda, Atsushi, Kubo, Takeo, Kunieda, Takekazu

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BioRuby: bioinformatics software for the Ruby programming language by Goto, Naohisa, Prins, Pjotr, Nakao, Mitsuteru, Bonnal, Raoul, Aerts, Jan, Katayama, Toshiaki

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TogoID: an exploratory ID converter to bridge biological datasets by Ikeda, Shuya, Ono, Hiromasa, Ohta, Tazro, Chiba, Hirokazu, Naito, Yuki, Moriya, Yuki, Kawashima, Shuichi, Yamamoto, Yasunori, Okamoto, Shinobu, Goto, Susumu, Katayama, Toshiaki

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SARS-CoV-2 HaploGraph: visualization of SARS-CoV-2 haplotype spread in Japan by Nakagawa, So, Katayama, Toshiaki, Jin, Lihua, Wu, Jiaqi, Kryukov, Kirill, Oyachi, Rise, Takeuchi, Junko S, Fujisawa, Takatomo, Asano, Satomi, Komatsu, Momoka, Onami, Jun-ichi, Abe, Takashi, Arita, Masanori

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TogoVar: A comprehensive Japanese genetic variation database by Mitsuhashi, Nobutaka, Toyo-oka, Licht, Katayama, Toshiaki, Kawashima, Minae, Kawashima, Shuichi, Miyazaki, Kazunori, Takagi, Toshihisa

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Two novel heat-soluble protein families abundantly expressed in an anhydrobiotic tardigrade by Yamaguchi, Ayami, Tanaka, Sae, Yamaguchi, Shiho, Kuwahara, Hirokazu, Takamura, Chizuko, Imajoh-Ohmi, Shinobu, Horikawa, Daiki D, Toyoda, Atsushi, Katayama, Toshiaki, Arakawa, Kazuharu, Fujiyama, Asao, Kubo, Takeo, Kunieda, Takekazu

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Ten simple rules to run a successful BioHackathon by Garcia, Leyla, Antezana, Erick, Garcia, Alexander, Bolton, Evan, Jimenez, Rafael, Prins, Pjotr, Banda, Juan M, Katayama, Toshiaki

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Analysis of DNA repair and protection in the Tardigrade Ramazzottius varieornatus and Hypsibius dujardini after exposure to UVC radiation by Horikawa, Daiki D, Cumbers, John, Sakakibara, Iori, Rogoff, Dana, Leuko, Stefan, Harnoto, Raechel, Arakawa, Kazuharu, Katayama, Toshiaki, Kunieda, Takekazu, Toyoda, Atsushi, Fujiyama, Asao, Rothschild, Lynn J

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TogoTable: cross-database annotation system using the Resource Description Framework (RDF) data model by Kawano, Shin, Watanabe, Tsutomu, Mizuguchi, Sohei, Araki, Norie, Katayama, Toshiaki, Yamaguchi, Atsuko

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Predicting the effects of drugs and unveiling their mechanisms of action using an interpretable pharmacodynamic mechanism knowledge graph (IPM-KG) by Tanaka, Tatsuya, Katayama, Toshiaki, Imai, Takeshi

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Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics by BONNAL, Raoul J. P, AERTS, Jan, STROZZI, Francesco, SYME, Rob, VOS, Rutger, WENNBLOM, Trevor J, WOODCROFT, Ben J, KATAYAMA, Toshiaki, PRINS, Pjotr, GITHINJI, George, GOTO, Naohisa, MACLEAN, Dan, MILLER, Chase A, MISHIMA, Hiroyuki, PAGANI, Massimiliano, RAMIREZ-GONZALEZ, Ricardo, SMANT, Geert

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BioHackathon 2015: Semantics of data for life sciences and reproducible research [version 1; peer review: 2 approved] by Vos, Rutger A, Katayama, Toshiaki, Mishima, Hiroyuki, Kawano, Shin, Kawashima, Shuichi, Kim, Jin-Dong, Moriya, Yuki, Tokimatsu, Toshiaki, Yamaguchi, Atsuko, Yamamoto, Yasunori, Wu, Hongyan, Amstutz, Peter, Antezana, Erick, Aoki, Nobuyuki P, Arakawa, Kazuharu, Bolleman, Jerven T, Bolton, Evan, Bonnal, Raoul J. P, Bono, Hidemasa, Burger, Kees, Chiba, Hirokazu, Cohen, Kevin B, Deutsch, Eric W, Fernández-Breis, Jesualdo T, Fu, Gang, Fujisawa, Takatomo, Fukushima, Atsushi, García, Alexander, Goto, Naohisa, Groza, Tudor, Hercus, Colin, Hoehndorf, Robert, Itaya, Kotone, Juty, Nick, Kawashima, Takeshi, Kim, Jee-Hyub, Kinjo, Akira R, Kotera, Masaaki, Kozaki, Kouji, Kumagai, Sadahiro, Kushida, Tatsuya, Lütteke, Thomas, Matsubara, Masaaki, Miyamoto, Joe, Mohsen, Attayeb, Mori, Hiroshi, Naito, Yuki, Nakazato, Takeru, Nguyen-Xuan, Jeremy, Nishida, Kozo, Nishida, Naoki, Nishide, Hiroyo, Ogishima, Soichi, Ohta, Tazro, Okuda, Shujiro, Paten, Benedict, Perret, Jean-Luc, Prathipati, Philip, Prins, Pjotr, Queralt-Rosinach, Núria, Shinmachi, Daisuke, Suzuki, Shinya, Tabata, Tsuyosi, Takatsuki, Terue, Taylor, Kieron, Thompson, Mark, Uchiyama, Ikuo, Vieira, Bruno, Wei, Chih-Hsuan, Wilkinson, Mark, Yamada, Issaku, Yamanaka, Ryota, Yoshitake, Kazutoshi, Yoshizawa, Akiyasu C, Dumontier, Michel, Kosaki, Kenjiro, Takagi, Toshihisa

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The Ruby UCSC API: accessing the UCSC genome database using Ruby by Mishima, Hiroyuki, Aerts, Jan, Katayama, Toshiaki, Bonnal, Raoul J P, Yoshiura, Koh-ichiro

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NBDC RDF portal: a comprehensive repository for semantic data in life sciences by Kawashima, Shuichi, Katayama, Toshiaki, Hatanaka, Hideki, Kushida, Tatsuya, Takagi, Toshihisa

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FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation by Bolleman, Jerven T, Mungall, Christopher J, Strozzi, Francesco, Baran, Joachim, Dumontier, Michel, Bonnal, Raoul J P, Buels, Robert, Hoehndorf, Robert, Fujisawa, Takatomo, Katayama, Toshiaki, Cock, Peter J A

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AAindex: amino acid index database, progress report 2008 by Kawashima, Shuichi, Pokarowski, Piotr, Pokarowska, Maria, Kolinski, Andrzej, Katayama, Toshiaki, Kanehisa, Minoru

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KEGG for linking genomes to life and the environment by Kanehisa, Minoru, Araki, Michihiro, Goto, Susumu, Hattori, Masahiro, Hirakawa, Mika, Itoh, Masumi, Katayama, Toshiaki, Kawashima, Shuichi, Okuda, Shujiro, Tokimatsu, Toshiaki, Yamanishi, Yoshihiro

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TogoGenome/TogoStanza: modularized Semantic Web genome database by Katayama, Toshiaki, Kawashima, Shuichi, Okamoto, Shinobu, Moriya, Yuki, Chiba, Hirokazu, Naito, Yuki, Fujisawa, Takatomo, Mori, Hiroshi, Takagi, Toshihisa

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DNA Data Bank of Japan by Mashima, Jun, Kodama, Yuichi, Fujisawa, Takatomo, Katayama, Toshiaki, Okuda, Yoshihiro, Kaminuma, Eli, Ogasawara, Osamu, Okubo, Kousaku, Nakamura, Yasukazu, Takagi, Toshihisa

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