Evaluating the Effects of Systemic, Exercise-Induced Skeletal Muscle Injury using Whole Transcriptome Sequencing by Tanner, Elizabeth A, Kim, Tracy A, Gary, Melody A, Stelly, Steven, Davis, Asheal, Bowman, Erin M, McFarlin, Brian Keith

Conserved Interferon-γ Signaling Drives Clinical Response to Immune Checkpoint Blockade Therapy in Melanoma by Grasso, Catherine S., Tsoi, Jennifer, Onyshchenko, Mykola, Abril-Rodriguez, Gabriel, Ross-Macdonald, Petra, Wind-Rotolo, Megan, Champhekar, Ameya, Medina, Egmidio, Torrejon, Davis Y., Shin, Daniel Sanghoon, Tran, Phuong, Kim, Yeon Joo, Puig-Saus, Cristina, Campbell, Katie, Vega-Crespo, Agustin, Quist, Michael, Martignier, Christophe, Luke, Jason J., Wolchok, Jedd D., Johnson, Douglas B., Chmielowski, Bartosz, Hodi, F. Stephen, Bhatia, Shailender, Sharfman, William, Urba, Walter J., Slingluff, Craig L., Diab, Adi, Haanen, John B.A.G., Algarra, Salvador Martin, Pardoll, Drew M., Anagnostou, Valsamo, Topalian, Suzanne L., Velculescu, Victor E., Speiser, Daniel E., Kalbasi, Anusha, Ribas, Antoni

Advancing the use of genome-wide association studies for drug repurposing by Reay, William R., Cairns, Murray J.

Comparative transcriptomic analysis unveils the deep phylogeny and secondary metabolite evolution of 116 Camellia plants by Wu, Qiong, Tong, Wei, Zhao, Huijuan, Ge, Ruoheng, Li, Ruopei, Huang, Jin, Li, Fangdong, Wang, Yanli, Mallano, Ali Inayat, Deng, Weiwei, Wang, Wenjie, Wan, Xiaochun, Zhang, Zhengzhu, Xia, Enhua

Candidate Genes Expression Profile Associated with Antidepressants Response in the GENDEP Study: Differentiating between Baseline ‘Predictors’ and Longitudinal ‘Targets’ by Cattaneo, Annamaria, Gennarelli, Massimo, Uher, Rudolf, Breen, Gerome, Farmer, Anne, Aitchison, Katherine J, Craig, Ian W, Anacker, Christoph, Zunsztain, Patricia A, McGuffin, Peter, Pariante, Carmine M

Dynamic transcriptome landscape of developing maize ear by Shen, Xiaomeng, Xiao, Bing, Kaderbek, Tangnur, Lin, Zhen, Tan, Kaiwen, Wu, Qingyu, Yuan, Lixing, Lai, Jinsheng, Zhao, Haiming, Song, Weibin

Spatiotemporal transcriptome atlas reveals gene regulatory patterns during the organogenesis of the rapid growing bamboo shoots by Guo, Jing, Luo, Dan, Chen, Yamao, Li, Fengjiao, Gong, Jiajia, Yu, Fen, Zhang, Wengen, Qi, Ji, Guo, Chunce

A promoter-level mammalian expression atlas by Forrest, Alistair R R, Kawaji, Hideya, Rehli, Michael, Baillie, J Kenneth, de Hoon, Michiel J L, Haberle, Vanja, Lassmann, Timo, Kulakovskiy, Ivan V, Lizio, Marina, Itoh, Masayoshi, Andersson, Robin, Mungall, Christopher J, Meehan, Terrence F, Schmeier, Sebastian, Bertin, Nicolas, Jørgensen, Mette, Dimont, Emmanuel, Arner, Erik, Schmidl, Christian, Schaefer, Ulf, Medvedeva, Yulia A, Plessy, Charles, Vitezic, Morana, Severin, Jessica, Semple, Colin A, Ishizu, Yuri, Young, Robert S, Francescatto, Margherita, Alam, Intikhab, Albanese, Davide, Altschuler, Gabriel M, Arakawa, Takahiro, Archer, John A C, Arner, Peter, Babina, Magda, Rennie, Sarah, Balwierz, Piotr J, Beckhouse, Anthony G, Pradhan-Bhatt, Swati, Blake, Judith A, Blumenthal, Antje, Bodega, Beatrice, Bonetti, Alessandro, Briggs, James, Brombacher, Frank, Burroughs, A Maxwell, Califano, Andrea, Cannistraci, Carlo V, Carbajo, Daniel, Chen, Yun, Chierici, Marco, Ciani, Yari, Clevers, Hans C, Dalla, Emiliano, Davis, Carrie A, Detmar, Michael, Diehl, Alexander D, Dohi, Taeko, Drabløs, Finn, Edge, Albert S B, Edinger, Matthias, Ekwall, Karl, Endoh, Mitsuhiro, Enomoto, Hideki, Fagiolini, Michela, Fairbairn, Lynsey, Fang, Hai, Farach-Carson, Mary C, Faulkner, Geoffrey J, Favorov, Alexander V, Fisher, Malcolm E, Frith, Martin C, Fujita, Rie, Fukuda, Shiro, Furlanello, Cesare, Furino, Masaaki, Furusawa, Jun-ichi, Geijtenbeek, Teunis B, Gibson, Andrew P, Gingeras, Thomas, Goldowitz, Daniel, Gough, Julian, Guhl, Sven, Guler, Reto, Gustincich, Stefano, Ha, Thomas J, Hamaguchi, Masahide, Hara, Mitsuko, Harbers, Matthias, Harshbarger, Jayson, Hasegawa, Akira, Hasegawa, Yuki, Hashimoto, Takehiro, Herlyn, Meenhard, Hitchens, Kelly J, Ho Sui, Shannan J, Hofmann, Oliver M, Hoof, Ilka, Hori, Furni, Huminiecki, Lukasz

Spatial and single-cell transcriptomics decipher the cellular environment containing HLA-G+ cancer cells and SPP1+ macrophages in colorectal cancer by Ozato, Yuki, Kojima, Yasuhiro, Kobayashi, Yuta, Hisamatsu, Yuuichi, Toshima, Takeo, Yonemura, Yusuke, Masuda, Takaaki, Kagawa, Kouichi, Goto, Yasuhiro, Utou, Mitsuaki, Fukunaga, Mituko, Gamachi, Ayako, Imamura, Kiyomi, Kuze, Yuta, Zenkoh, Junko, Suzuki, Ayako, Niida, Atsushi, Hirose, Haruka, Hayashi, Shuto, Koseki, Jun, Oki, Eiji, Fukuchi, Satoshi, Murakami, Kazunari, Tobo, Taro, Nagayama, Satoshi, Uemura, Mamoru, Sakamoto, Takeharu, Oshima, Masanobu, Doki, Yuichiro, Eguchi, Hidetoshi, Mori, Masaki, Iwasaki, Takeshi, Oda, Yoshinao, Shibata, Tatsuhiro, Suzuki, Yutaka, Shimamura, Teppei, Mimori, Koshi

Landscape and Dynamics of Single Immune Cells in Hepatocellular Carcinoma by Zhang, Qiming, He, Yao, Luo, Nan, Patel, Shashank J., Han, Yanjie, Gao, Ranran, Modak, Madhura, Carotta, Sebastian, Haslinger, Christian, Kind, David, Peet, Gregory W., Zhong, Guojie, Lu, Shuangjia, Zhu, Weihua, Mao, Yilei, Xiao, Mengmeng, Bergmann, Michael, Hu, Xueda, Kerkar, Sid P., Vogt, Anne B., Pflanz, Stefan, Liu, Kang, Peng, Jirun, Ren, Xianwen, Zhang, Zemin

Plant biotechnology research with single-cell transcriptome: recent advancements and prospects by Ali, Muhammad, Yang, Tianxia, He, Hai, Zhang, Yu

Integrative analyses of metabolome and genome‐wide transcriptome reveal the regulatory network governing flavor formation in kiwifruit ( Actinidia chinensis ) by Zhang, Bo, University of Nottingham, UK (UON), Xie, Yue, Ma, Tao, Chongqing University [Chongqing], the National Natural Science Foundation of China, Grierson, Don, Sichuan University [Chengdu] (SCU), Pirrello, Julien, Zhang, Yang, Liu, Mingchun, Zhang, Yaoxin, Zhejiang University [Hangzhou, China], Zhang, Chi, the Fundamental Research Funds for the Central Universities (SCU2020D003), the Science and TechnologyInnovation Talent Project of Sichuan province (2018RZ0144), Li, Mingzhang, Chen, Kunsong, Shu, Peng, Bouzayen, Mondher, Sichuan Provincial Academy of Natural Resource Sciences, Zhang, Junlin, the Applied Basic Research Category of Science and Technology Program of Sichuan Province (nos. 2020YJ0248, 2021YFYZ0010), Chen, Ya, National Key R&D Program of China (2016YFD0400101), Wang, Ruochen, Génomique et Biotechnologie des Fruits (GBF), École nationale supérieure agronomique de Toulouse (ENSAT), Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National Polytechnique (Toulouse) (Toulouse INP), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Du, Kui, Li, Zhengguo

Longitudinal Multi-omics Reveals Subset-Specific Mechanisms Underlying Irritable Bowel Syndrome by Mars, Ruben A.T., Yang, Yi, Ward, Tonya, Houtti, Mo, Priya, Sambhawa, Lekatz, Heather R., Tang, Xiaojia, Sun, Zhifu, Kalari, Krishna R., Korem, Tal, Bhattarai, Yogesh, Zheng, Tenghao, Bar, Noam, Frost, Gary, Johnson, Abigail J., van Treuren, Will, Han, Shuo, Ordog, Tamas, Grover, Madhusudan, Sonnenburg, Justin, D’Amato, Mauro, Camilleri, Michael, Elinav, Eran, Segal, Eran, Blekhman, Ran, Farrugia, Gianrico, Swann, Jonathan R., Knights, Dan, Kashyap, Purna C.

Dupilumab progressively improves systemic and cutaneous abnormalities in patients with atopic dermatitis by Guttman-Yassky, Emma, Bissonnette, Robert, Ungar, Benjamin, Suárez-Fariñas, Mayte, Ardeleanu, Marius, Esaki, Hitokazu, Suprun, Maria, Estrada, Yeriel, Xu, Hui, Peng, Xiangyu, Silverberg, Jonathan I., Menter, Alan, Krueger, James G., Zhang, Rick, Chaudhry, Usman, Swanson, Brian, Graham, Neil M.H., Pirozzi, Gianluca, Yancopoulos, George D., D. Hamilton, Jennifer D.

BCG Vaccination in Humans Elicits Trained Immunity via the Hematopoietic Progenitor Compartment by Cirovic, Branko, de Bree, L. Charlotte J., Groh, Laszlo, Blok, Bas A., Chan, Joyce, van der Velden, Walter J.F.M., Bremmers, M.E.J., van Crevel, Reinout, Händler, Kristian, Picelli, Simone, Schulte-Schrepping, Jonas, Klee, Kathrin, Oosting, Marije, Koeken, Valerie A.C.M., van Ingen, Jakko, Li, Yang, Benn, Christine S., Schultze, Joachim L., Joosten, Leo A.B., Curtis, Nigel, Netea, Mihai G., Schlitzer, Andreas

Integrated metabolome, full‐length sequencing, and transcriptome analyses unveil the molecular mechanisms of color formation of the canary yellow and red bracts of Bougainvillea ×... by Kang, Yuqian, Li, Yuxin, Zhang, Tingting, Wang, Peng, Liu, Wen, Zhang, Zhao, Yu, Wengang, Wang, Jian, Wang, Jian, Zhou, Yang

Nicotinamide Riboside Augments the Aged Human Skeletal Muscle NAD+ Metabolome and Induces Transcriptomic and Anti-inflammatory Signatures by Elhassan, Yasir S., Kluckova, Katarina, Fletcher, Rachel S., Schmidt, Mark S., Garten, Antje, Doig, Craig L., Cartwright, David M., Oakey, Lucy, Burley, Claire V., Jenkinson, Ned, Wilson, Martin, Lucas, Samuel J.E., Akerman, Ildem, Seabright, Alex, Lai, Yu-Chiang, Tennant, Daniel A., Nightingale, Peter, Wallis, Gareth A., Manolopoulos, Konstantinos N., Brenner, Charles, Philp, Andrew, Lavery, Gareth G.

Resolving floral development dynamics using genome and single‐cell temporal transcriptome of Dendrobium devonianum by Wang, Jing, Zhou, Ying, Zhang, Manchang, Li, Xinping, Liu, Tingxia, Liu, Yinglin, Xie, He, Wang, Kaiying, Li, Peng, Xu, Zhichao, Duan, Baozhong

Transcriptomic profiling of insulinomas reveals a new “low-endocrine” subtype with low YY1 expressions by Li, Yongzheng, Zhang, Xingwu, Xu, Qiang, Han, Xianlin, Guo, Dan, Jiao, Yixi, Zhang, Hao, Yin, Bohui, Hong, Xiafei, Wu, Wenming

GSDMB is increased in IBD and regulates epithelial restitution/repair independent of pyroptosis by Rana, Nitish, Privitera, Giuseppe, Kondolf, Hannah C., Bulek, Katarzyna, Lechuga, Susana, De Salvo, Carlo, Corridoni, Daniele, Antanaviciute, Agne, Maywald, Rebecca L., Hurtado, Alexander M., Zhao, Junjie, Huang, Emina H., Li, Xiaoxia, Chan, E. Ricky, Simmons, Alison, Bamias, Giorgos, Abbott, Derek W., Heaney, Jason D., Ivanov, Andrei I., Pizarro, Theresa T.