A promoter-level mammalian expression atlas by Forrest, Alistair R R, Kawaji, Hideya, Rehli, Michael, Baillie, J Kenneth, de Hoon, Michiel J L, Haberle, Vanja, Lassmann, Timo, Kulakovskiy, Ivan V, Lizio, Marina, Itoh, Masayoshi, Andersson, Robin, Mungall, Christopher J, Meehan, Terrence F, Schmeier, Sebastian, Bertin, Nicolas, Jørgensen, Mette, Dimont, Emmanuel, Arner, Erik, Schmidl, Christian, Schaefer, Ulf, Medvedeva, Yulia A, Plessy, Charles, Vitezic, Morana, Severin, Jessica, Semple, Colin A, Ishizu, Yuri, Young, Robert S, Francescatto, Margherita, Alam, Intikhab, Albanese, Davide, Altschuler, Gabriel M, Arakawa, Takahiro, Archer, John A C, Arner, Peter, Babina, Magda, Rennie, Sarah, Balwierz, Piotr J, Beckhouse, Anthony G, Pradhan-Bhatt, Swati, Blake, Judith A, Blumenthal, Antje, Bodega, Beatrice, Bonetti, Alessandro, Briggs, James, Brombacher, Frank, Burroughs, A Maxwell, Califano, Andrea, Cannistraci, Carlo V, Carbajo, Daniel, Chen, Yun, Chierici, Marco, Ciani, Yari, Clevers, Hans C, Dalla, Emiliano, Davis, Carrie A, Detmar, Michael, Diehl, Alexander D, Dohi, Taeko, Drabløs, Finn, Edge, Albert S B, Edinger, Matthias, Ekwall, Karl, Endoh, Mitsuhiro, Enomoto, Hideki, Fagiolini, Michela, Fairbairn, Lynsey, Fang, Hai, Farach-Carson, Mary C, Faulkner, Geoffrey J, Favorov, Alexander V, Fisher, Malcolm E, Frith, Martin C, Fujita, Rie, Fukuda, Shiro, Furlanello, Cesare, Furino, Masaaki, Furusawa, Jun-ichi, Geijtenbeek, Teunis B, Gibson, Andrew P, Gingeras, Thomas, Goldowitz, Daniel, Gough, Julian, Guhl, Sven, Guler, Reto, Gustincich, Stefano, Ha, Thomas J, Hamaguchi, Masahide, Hara, Mitsuko, Harbers, Matthias, Harshbarger, Jayson, Hasegawa, Akira, Hasegawa, Yuki, Hashimoto, Takehiro, Herlyn, Meenhard, Hitchens, Kelly J, Ho Sui, Shannan J, Hofmann, Oliver M, Hoof, Ilka, Hori, Furni, Huminiecki, Lukasz

Conserved Interferon-γ Signaling Drives Clinical Response to Immune Checkpoint Blockade Therapy in Melanoma by Grasso, Catherine S., Tsoi, Jennifer, Onyshchenko, Mykola, Abril-Rodriguez, Gabriel, Ross-Macdonald, Petra, Wind-Rotolo, Megan, Champhekar, Ameya, Medina, Egmidio, Torrejon, Davis Y., Shin, Daniel Sanghoon, Tran, Phuong, Kim, Yeon Joo, Puig-Saus, Cristina, Campbell, Katie, Vega-Crespo, Agustin, Quist, Michael, Martignier, Christophe, Luke, Jason J., Wolchok, Jedd D., Johnson, Douglas B., Chmielowski, Bartosz, Hodi, F. Stephen, Bhatia, Shailender, Sharfman, William, Urba, Walter J., Slingluff, Craig L., Diab, Adi, Haanen, John B.A.G., Algarra, Salvador Martin, Pardoll, Drew M., Anagnostou, Valsamo, Topalian, Suzanne L., Velculescu, Victor E., Speiser, Daniel E., Kalbasi, Anusha, Ribas, Antoni

BCG Vaccination in Humans Elicits Trained Immunity via the Hematopoietic Progenitor Compartment by Cirovic, Branko, de Bree, L. Charlotte J., Groh, Laszlo, Blok, Bas A., Chan, Joyce, van der Velden, Walter J.F.M., Bremmers, M.E.J., van Crevel, Reinout, Händler, Kristian, Picelli, Simone, Schulte-Schrepping, Jonas, Klee, Kathrin, Oosting, Marije, Koeken, Valerie A.C.M., van Ingen, Jakko, Li, Yang, Benn, Christine S., Schultze, Joachim L., Joosten, Leo A.B., Curtis, Nigel, Netea, Mihai G., Schlitzer, Andreas

The single-cell epigenomic and transcriptional landscape of immunity to influenza vaccination by Wimmers, Florian, Donato, Michele, Kuo, Alex, Ashuach, Tal, Gupta, Shakti, Li, Chunfeng, Dvorak, Mai, Foecke, Mariko Hinton, Chang, Sarah E., Hagan, Thomas, De Jong, Sanne E., Maecker, Holden T., van der Most, Robbert, Cheung, Peggie, Cortese, Mario, Bosinger, Steven E., Davis, Mark, Rouphael, Nadine, Subramaniam, Shankar, Yosef, Nir, Utz, Paul J., Khatri, Purvesh, Pulendran, Bali

Genome and transcriptome mechanisms driving cephalopod evolution by Albertin, Caroline B., Medina-Ruiz, Sofia, Mitros, Therese, Schmidbaur, Hannah, Sanchez, Gustavo, Wang, Z. Yan, Grimwood, Jane, Rosenthal, Joshua J. C., Ragsdale, Clifton W., Simakov, Oleg, Rokhsar, Daniel S.

Candidate Genes Expression Profile Associated with Antidepressants Response in the GENDEP Study: Differentiating between Baseline ‘Predictors’ and Longitudinal ‘Targets’ by Cattaneo, Annamaria, Gennarelli, Massimo, Uher, Rudolf, Breen, Gerome, Farmer, Anne, Aitchison, Katherine J, Craig, Ian W, Anacker, Christoph, Zunsztain, Patricia A, McGuffin, Peter, Pariante, Carmine M

SARS-CoV-2 susceptibility and COVID-19 disease severity are associated with genetic variants affecting gene expression in a variety of tissues by D’Antonio, Matteo, Chwialkowska, Karolina, Tenesa, Albert, D’Mellow, Kenton, Aprile von Hohenstaufen, Kathrin, Eltoukhy, Madonna M., Yassen, Amr M., Moahmed, Hanteera S., Tobin, Martin D., Guyatt, Anna L., Hollox, Edward J., Sharififard, Bahareh, Abdollahi, Hamed, Puthanakit, Thanyawee, Suchartlikitwong, Pintip, Sodsai, Pimpayao, Alaamery, Manal, Aljawini, Nora, Albesher, Nour, Alahmadey, Ziab Z., Suliman, Bandar A., Al-Afghani, Hani, Massadeh, Salam, Muiño, Elena, Coto, Eliecer, Albaiceta, Guillermo M., Dietl, Beatriz, Martí-Fàbregas, Joan, Villalonga, Joan Montaner, Menéndez-Valladares, Paloma, Glessner, Joseph R., Forgetta, Vincenzo, Ghosh, Biswarup, Guiot, Julien, Guntz, Julien, Beguin, Yves, Claassen, Sabine, Malaise, Olivier, Daya, Michelle, Chavan, Sameer, Laisk, Triin, Alavere, Helene, Metsalu, Kristjan, Peterson, Pärt, Cortés, Beatriz, Torrents, David, Fallerini, Chiara, Doddato, Gabriella, Bruttini, Mirella, Pinto, Anna Maria, Bruno, Raffaele, Picchiotti, Nicola, Mantovani, Stefania, Bargagli, Elena, D’Alessandro, Miriana, Franchi, Federico, Cantarini, Luca, Tacconi, Danilo, Desanctis, Elena, Antinori, Andrea, Vergori, Alessandra, Baratti, Stefano, Menatti, Elisabetta, Trotta, Tullio, Martinelli, Enrico, Bachetti, Tiziana, Ceri, Stefano, Parati, Gianfranco, Ravaglia, Sabrina, Catena, Emanuele, Pessina, Gloria, Tumbarello, Mario, Guarnaccia, Alessandra, Boughton, Andrew P., Annis, Aubrey, Carey, Dave J., Gass, Matthew C., Abecasis, Goncalo R., Butterworth, Adam S., Nivard, Michel (M.G.), de geus, Eco (E.J.C.), Verma, Anurag, Ritchie, Marylyn D., Verma, Shefali S., Lucas, Anastasia, Karczewski, Konrad J., Walters, Raymond K., Palmer, Duncan S., Sarma, Gopal, Crook, Derrick W., Koelling, Nils, Moutsianas, Loukas, Rhodes, Daniel, Ball, Catherine A., Baltzell, Asher Haug, Gaddis, Michael, Noto, Keith, Tang, Lara, Nadkarni, Girish N., Choi, Sam

Integrated analysis of methylome and transcriptome responses to exercise training in children with overweight/obesity by Plaza-Florido, Abel, Anguita-Ruiz, Augusto, Esteban, Francisco J., Aguilera, Concepción M., Labayen, Idoia, Reitzner, Stefan Markus, Sundberg, Carl Johan, Radom-Aizik, Shlomit, Ortega, Francisco B., Altmäe, Signe

Global transcript structure resolution of high gene density genomes through multi-platform data integration by O'Grady, Tina, Wang, Xia, Höner zu Bentrup, Kerstin, Baddoo, Melody, Concha, Monica, Flemington, Erik K.

Natural variation in response to combined water and nitrogen deficiencies in Arabidopsis by Huguet, Stéphanie, Krapp, Anne, Oxford Academic, Marmagne, Anne, Institut des Sciences des Plantes de Paris-Saclay (IPS2 (UMR_9213 / UMR_1403)), Université d'Évry-Val-d'Essonne (UEVE)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Xue, Zeyun, ANR-17-EURE-0007,SPS-GSR,Ecole Universitaire de Recherche de Sciences des Plantes de Paris-Saclay, Loudet, Olivier, ANR-15-CE20-0006,stressnet,Génetique de prochaine génération pour identifier les réseaux de régulation impliqués dans la réponse aux stress abiotiques (simples et combinés) chez Arabidopsis, Ferrand, Marina, Meyer, Christian, Institut Jean-Pierre Bourgin - Sciences du végétal (IJPB), AgroParisTech-Université Paris-Saclay-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Clément, Gilles, Gilbault, Elodie, Jiménez-Gómez, José, Zurfluh, Olivier

A CD8+ NK cell transcriptomic signature associated with clinical outcome in relapsing remitting multiple sclerosis by McKinney, Eoin F., Cuthbertson, Iona, Harris, Kristina M., Smilek, Dawn E., Connor, Christopher, Manferrari, Giulia, Carr, Edward J., Zamvil, Scott S., Smith, Kenneth G. C.

The role of transcriptomic biomarkers of endometrial receptivity in personalized embryo transfer for patients with repeated implantation failure by He, Aihua, Zou, Yangyun, Wan, Cheng, Zhao, Jing, Zhang, Qiong, Yao, Zhongyuan, Tian, Fen, Wu, Hong, Huang, Xi, Fu, Jing, Hu, Chunxu, Sun, Yue, Xiao, Lan, Yang, Tianli, Hou, Zhaojuan, Dong, Xin, Lu, Sijia, Li, Yanping

MRLocus: Identifying causal genes mediating a trait through Bayesian estimation of allelic heterogeneity by Zhu, Anqi, Matoba, Nana, Wilson, Emma P., Tapia, Amanda L., Li, Yun, Ibrahim, Joseph G., Stein, Jason L., Love, Michael I.

Multi-omic integrated networks connect DNA methylation and miRNA with skeletal muscle plasticity to chronic exercise in Type 2 diabetic obesity by Rowlands, David S., Page, Rachel A., Sukala, William R., Giri, Mamta, Ghimbovschi, Svetlana D., Hayat, Irum, Cheema, Birinder S., Lys, Isabelle, Leikis, Murray, Sheard, Phillip W., Wakefield, St. John, Breier, Bernhard, Hathout, Yetrib, Brown, Kristy, Marathi, Ramya, Orkunoglu-Suer, Funda E., Devaney, Joseph M., Leiken, Benjamin, Many, Gina, Krebs, Jeremy, Hopkins, Will G., Hoffman, Eric P.

A consensus blood transcriptomic framework for sepsis by Scicluna, Brendon P., Cano-Gamez, Kiki, Burnham, Katie L., Davenport, Emma E., Moore, Andrew Reese, Khan, Soumen, Hinds, Charles J., Cremer, Olaf L., Khatri, Purvesh, Sweeney, Timothy E., Knight, Julian C., van der Poll, Tom

Novel whole blood transcriptome signatures of changes in maximal aerobic capacity in response to endurance exercise training in healthy women by LaRocca, Thomas J., Smith, Meghan E., Freeberg, Kaitlin A., Craighead, Daniel H., Helmuth, Timothy, Robinson, Matthew M., Nair, K. Sreekumaran, Bryan, Angela D., Seals, Douglas R.

Dynamic transcriptomic responses to divergent acute exercise stimuli in young adults by Lavin, Kaleen M., Graham, Zachary A., McAdam, Jeremy S., O’Bryan, Samia M., Drummer, Devin, Bell, Margaret B., Kelley, Christian J., Lixandrão, Manoel E., Peoples, Brandon, Tuggle, S. Craig, Seay, Regina S., Van Keuren-Jensen, Kendall, Huentelman, Matthew J., Pirrotte, Patrick, Reiman, Rebecca, Alsop, Eric, Hutchins, Elizabeth, Antone, Jerry, Bonfitto, Anna, Meechoovet, Bessie, Palade, Joanna, Talboom, Joshua S., Sullivan, Amber, Aban, Inmaculada, Peri, Kalyani, Broderick, Timothy J., Bamman, Marcas M.

Identification of a multidimensional transcriptome signature for survival prediction of postoperative glioblastoma multiforme patients by Gao, Wei-Zhen, Guo, Lie-Mei, Xu, Tian-Qi, Yin, Yu-Hua, Jia, Feng

Endogenous Retroviruses Transcriptional Modulation After Severe Infection, Trauma and Burn by Tabone, Olivier, Mommert, Marine, Jourdan, Camille, Cerrato, Elisabeth, Legrand, Matthieu, Lepape, Alain, Allaouchiche, Bernard, Rimmelé, Thomas, Pachot, Alexandre, Monneret, Guillaume, Venet, Fabienne, Mallet, François, Textoris, Julien

A robust six‐miRNA prognostic signature for head and neck squamous cell carcinoma by Zhao, Xinyuan, Cui, Li