Identification of potential modulators of IFITM3 by in-silico modeling and virtual screening by Tiwari, Vikas, Viswanath, Shruthi

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A Framework for Stochastic Optimization of Parameters for Integrative Modeling of Macromolecular Assemblies by Pasani, Satwik, Viswanath, Shruthi

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CM1-driven assembly and activation of yeast γ-tubulin small complex underlies microtubule nucleation by Brilot, Axel F, Lyon, Andrew S, Zelter, Alex, Viswanath, Shruthi, Maxwell, Alison, MacCoss, Michael J, Muller, Eric G, Sali, Andrej, Davis, Trisha N, Agard, David A

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Architecture of the Human and Yeast General Transcription and DNA Repair Factor TFIIH by Luo, Jie, Cimermancic, Peter, Viswanath, Shruthi, Ebmeier, Christopher C., Kim, Bong, Dehecq, Marine, Raman, Vishnu, Greenberg, Charles H., Pellarin, Riccardo, Sali, Andrej, Taatjes, Dylan J., Hahn, Steven, Ranish, Jeff

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Color call improvement in next generation sequencing using multi-class support vector machines by Viswanath, Shruthi, Yang, Chengyong

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Optimizing model representation for integrative structure determination of macromolecular assemblies by Viswanath, Shruthi, Sali, Andrej

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PrISM: precision for integrative structural models by Ullanat, Varun, Kasukurthi, Nikhil, Viswanath, Shruthi

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The molecular architecture of the desmosomal outer dense plaque by integrative structural modeling by Pasani, Satwik, Menon, Kavya S., Viswanath, Shruthi

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Assessing Exhaustiveness of Stochastic Sampling for Integrative Modeling of Macromolecular Structures by Viswanath, Shruthi, Chemmama, Ilan E., Cimermancic, Peter, Sali, Andrej

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Integrative structure modeling with the Integrative Modeling Platform by Webb, Benjamin, Viswanath, Shruthi, Bonomi, Massimiliano, Pellarin, Riccardo, Greenberg, Charles H., Saltzberg, Daniel, Sali, Andrej

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Optimizing representations for integrative structural modeling using Bayesian model selection by Arvindekar, Shreyas, Pathak, Aditi S, Majila, Kartik, Viswanath, Shruthi

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Using Integrative Modeling Platform to compute, validate, and archive a model of a protein complex structure by Saltzberg, Daniel J., Viswanath, Shruthi, Echeverria, Ignacia, Chemmama, Ilan E., Webb, Ben, Sali, Andrej

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Molecular architecture of nucleosome remodeling and deacetylase sub‐complexes by integrative structure determination by Arvindekar, Shreyas, Jackman, Matthew J., Low, Jason K. K., Landsberg, Michael J., Mackay, Joel P., Viswanath, Shruthi

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Molecular architecture of nucleosome remodeling and deacetylase sub-complexes by integrative structure determination by Arvindekar, Shreyas M., Jackman, Matthew J., Low, Jason K.K., Landsberg, Michael J., Mackay, Joel P., Viswanath, Shruthi

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Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment by Lensink, Marc F., Velankar, Sameer, Kryshtafovych, Andriy, Huang, Shen-You, Schneidman-Duhovny, Dina, Segura, Joan, Fernandez-Fuentes, Narcis, Viswanath, Shruthi, Elber, Ron, Grudinin, Sergei, Popov, Petr, Neveu, Emilie, Lee, Hasup, Baek, Minkyung, Park, Sangwoo, Heo, Lim, Rie Lee, Gyu, Seok, Chaok, Qin, Sanbo, Zhou, Huan-Xiang, Ritchie, David W., Maigret, Bernard, Devignes, Marie-Dominique, Ghoorah, Anisah, Torchala, Mieczyslaw, Chaleil, Raphaël A.G., Bates, Paul A., Ben-Zeev, Efrat, Eisenstein, Miriam, Negi, Surendra S., Weng, Zhiping, Vreven, Thom, Pierce, Brian G., Borrman, Tyler M., Yu, Jinchao, Ochsenbein, Françoise, Guerois, Raphaël, Vangone, Anna, Rodrigues, João P.G.L.M., van Zundert, Gydo, Nellen, Mehdi, Xue, Li, Karaca, Ezgi, Melquiond, Adrien S.J., Visscher, Koen, Kastritis, Panagiotis L., Bonvin, Alexandre M.J.J., Xu, Xianjin, Qiu, Liming, Yan, Chengfei, Li, Jilong, Ma, Zhiwei, Cheng, Jianlin, Zou, Xiaoqin, Shen, Yang, Peterson, Lenna X., Kim, Hyung-Rae, Roy, Amit, Han, Xusi, Esquivel-Rodriguez, Juan, Kihara, Daisuke, Yu, Xiaofeng, Bruce, Neil J., Fuller, Jonathan C., Wade, Rebecca C., Anishchenko, Ivan, Kundrotas, Petras J., Vakser, Ilya A., Imai, Kenichiro, Yamada, Kazunori, Oda, Toshiyuki, Nakamura, Tsukasa, Tomii, Kentaro, Pallara, Chiara, Romero-Durana, Miguel, Jiménez-García, Brian, Moal, Iain H., Férnandez-Recio, Juan, Joung, Jong Young, Kim, Jong Yun, Joo, Keehyoung, Lee, Jooyoung, Kozakov, Dima, Vajda, Sandor, Mottarella, Scott, Hall, David R., Beglov, Dmitri, Mamonov, Artem, Xia, Bing, Bohnuud, Tanggis, Del Carpio, Carlos A., Ichiishi, Eichiro, Marze, Nicholas, Kuroda, Daisuke, Gray, Jeffrey J., Chermak, Edrisse, Cavallo, Luigi, Oliva, Romina, Tovchigrechko, Andrey, Wodak, Shoshana J.

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Analyzing milestoning networks for molecular kinetics: definitions, algorithms, and examples by Viswanath, Shruthi, Kreuzer, Steven M, Cardenas, Alfredo E, Elber, Ron

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Improving ranking of models for protein complexes with side chain modeling and atomic potentials by Viswanath, Shruthi, Ravikant, D. V. S., Elber, Ron

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Extension of a protein docking algorithm to membranes and applications to amyloid precursor protein dimerization by Viswanath, Shruthi, Dominguez, Laura, Foster, Leigh S., Straub, John E., Elber, Ron

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The molecular architecture of the yeast spindle pole body core determined by Bayesian integrative modeling by Viswanath, Shruthi, Bonomi, Massimiliano, Kim, Seung Joong, Klenchin, Vadim A, Taylor, Keenan C, Yabut, King C, Umbreit, Neil T, Van Epps, Heather A, Meehl, Janet, Jones, Michele H, Russel, Daniel, Velazquez-Muriel, Javier A, Winey, Mark, Rayment, Ivan, Davis, Trisha N, Sali, Andrej, Muller, Eric G

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A Bayesian Integrative Structure Model of the Yeast Centrosome by Viswanath, Shruthi, Bonomi, Massimiliano, Joong Kim, Seung, Klenchin, Vadim A., Taylor, Keenan, Yabut, King C., Umbreit, Neil T., Meehl, Janet, Jones, Michele H., Velazquez-Muriel, Javier, Winey, Mark, Rayment, Ivan, Davis, Trisha N., Sali, Andrej, Muller, Eric D.

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