The Treatment-Naive Microbiome in New-Onset Crohn’s Disease by Gevers, Dirk, Kugathasan, Subra, Denson, Lee A., Vázquez-Baeza, Yoshiki, Van Treuren, Will, Ren, Boyu, Schwager, Emma, Knights, Dan, Song, Se Jin, Yassour, Moran, Morgan, Xochitl C., Kostic, Aleksandar D., Luo, Chengwei, González, Antonio, McDonald, Daniel, Haberman, Yael, Walters, Thomas, Baker, Susan, Rosh, Joel, Stephens, Michael, Heyman, Melvin, Markowitz, James, Baldassano, Robert, Griffiths, Anne, Sylvester, Francisco, Mack, David, Kim, Sandra, Crandall, Wallace, Hyams, Jeffrey, Huttenhower, Curtis, Knight, Rob, Xavier, Ramnik J.

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A microbial clock provides an accurate estimate of the postmortem interval in a mouse model system by Metcalf, Jessica L, Wegener Parfrey, Laura, Gonzalez, Antonio, Lauber, Christian L, Knights, Dan, Ackermann, Gail, Humphrey, Gregory C, Gebert, Matthew J, Van Treuren, Will, Berg-Lyons, Donna, Keepers, Kyle, Guo, Yan, Bullard, James, Fierer, Noah, Carter, David O, Knight, Rob

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Significant Impacts of Increasing Aridity on the Arid Soil Microbiome by Neilson, Julia W, Califf, Katy, Cardona, Cesar, Copeland, Audrey, van Treuren, Will, Josephson, Karen L, Knight, Rob, Gilbert, Jack A, Quade, Jay, Caporaso, J Gregory, Maier, Raina M

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Diversity of Rickettsiales in the Microbiome of the Lone Star Tick, Amblyomma americanum by Ponnusamy, Loganathan, Gonzalez, Antonio, Van Treuren, Will, Weiss, Sophie, Parobek, Christian M, Juliano, Jonathan J, Knight, Rob, Roe, R Michael, Apperson, Charles S, Meshnick, Steven R

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A Gut Commensal-Produced Metabolite Mediates Colonization Resistance to Salmonella Infection by Jacobson, Amanda, Lam, Lilian, Rajendram, Manohary, Tamburini, Fiona, Honeycutt, Jared, Pham, Trung, Van Treuren, Will, Pruss, Kali, Stabler, Stephen Russell, Lugo, Kyler, Bouley, Donna M., Vilches-Moure, Jose G., Smith, Mark, Sonnenburg, Justin L., Bhatt, Ami S., Huang, Kerwyn Casey, Monack, Denise

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A metabolomics pipeline for the mechanistic interrogation of the gut microbiome by Han, Shuo, Van Treuren, Will, Fischer, Curt R., Merrill, Bryan D., DeFelice, Brian C., Sanchez, Juan M., Higginbottom, Steven K., Guthrie, Leah, Fall, Lalla A., Dodd, Dylan, Fischbach, Michael A., Sonnenburg, Justin L.

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Longitudinal Multi-omics Reveals Subset-Specific Mechanisms Underlying Irritable Bowel Syndrome by Mars, Ruben A.T., Yang, Yi, Ward, Tonya, Houtti, Mo, Priya, Sambhawa, Lekatz, Heather R., Tang, Xiaojia, Sun, Zhifu, Kalari, Krishna R., Korem, Tal, Bhattarai, Yogesh, Zheng, Tenghao, Bar, Noam, Frost, Gary, Johnson, Abigail J., van Treuren, Will, Han, Shuo, Ordog, Tamas, Grover, Madhusudan, Sonnenburg, Justin, D’Amato, Mauro, Camilleri, Michael, Elinav, Eran, Segal, Eran, Blekhman, Ran, Farrugia, Gianrico, Swann, Jonathan R., Knights, Dan, Kashyap, Purna C.

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Longitudinal analysis of microbial interaction between humans and the indoor environment by Lax, Simon, Smith, Daniel P., Hampton-Marcell, Jarrad, Owens, Sarah M., Handley, Kim M., Scott, Nicole M., Gibbons, Sean M., Larsen, Peter, Shogan, Benjamin D., Weiss, Sophie, Metcalf, Jessica L., Ursell, Luke K., Vázquez-Baeza, Yoshiki, Van Treuren, Will, Hasan, Nur A., Gibson, Molly K., Colwell, Rita, Dantas, Gautam, Knight, Rob, Gilbert, Jack A.

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Correlation detection strategies in microbial data sets vary widely in sensitivity and precision by Weiss, Sophie, Van Treuren, Will, Lozupone, Catherine, Faust, Karoline, Friedman, Jonathan, Deng, Ye, Xia, Li Charlie, Xu, Zhenjiang Zech, Ursell, Luke, Alm, Eric J, Birmingham, Amanda, Cram, Jacob A, Fuhrman, Jed A, Raes, Jeroen, Sun, Fengzhu, Zhou, Jizhong, Knight, Rob

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Exercise is More Effective at Altering Gut Microbial Composition and Producing Stable Changes in Lean Mass in Juvenile versus Adult Male F344 Rats by Mika, Agnieszka, Van Treuren, Will, González, Antonio, Herrera, Jonathan J, Knight, Rob, Fleshner, Monika

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In Vivo Wireless Sensors for Gut Microbiome Redox Monitoring by Baltsavias, Spyridon, Van Treuren, Will, Weber, Marcus J., Charthad, Jayant, Baker, Sam, Sonnenburg, Justin L., Arbabian, Amin

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Subsistence strategies in traditional societies distinguish gut microbiomes by Obregon-Tito, Alexandra J., Tito, Raul Y., Metcalf, Jessica, Sankaranarayanan, Krithivasan, Clemente, Jose C., Ursell, Luke K., Zech Xu, Zhenjiang, Van Treuren, Will, Knight, Rob, Gaffney, Patrick M., Spicer, Paul, Lawson, Paul, Marin-Reyes, Luis, Trujillo-Villarroel, Omar, Foster, Morris, Guija-Poma, Emilio, Troncoso-Corzo, Luzmila, Warinner, Christina, Ozga, Andrew T., Lewis, Cecil M.

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Microbial community assembly and metabolic function during mammalian corpse decomposition by Metcalf, Jessica L., Xu, Zhenjiang Zech, Weiss, Sophie, Lax, Simon, Van Treuren, Will, Hyde, Embriette R., Song, Se Jin, Amir, Amnon, Larsen, Peter, Sangwan, Naseer, Haarmann, Daniel, Humphrey, Greg C., Ackermann, Gail, Thompson, Luke R., Lauber, Christian, Bibat, Alexander, Nicholas, Catherine, Gebert, Matthew J., Petrosino, Joseph F., Reed, Sasha C., Gilbert, Jack A., Lynne, Aaron M., Bucheli, Sibyl R., Carter, David O., Knight, Rob

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Gut Microbiome Redox Sensors With Ultrasonic Wake-Up and Galvanic Coupling Wireless Links by Baltsavias, Spyridon, Van Treuren, Will, Sawaby, Ahmed, Baker, Sam W., Sonnenburg, Justin L., Arbabian, Amin

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Inhibitory bacteria reduce fungi on early life stages of endangered Colorado boreal toads (Anaxyrus boreas) by Kueneman, Jordan G, Woodhams, Douglas C, Van Treuren, Will, Archer, Holly M, Knight, Rob, McKenzie, Valerie J

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Live imaging of Aiptasia larvae, a model system for coral and anemone bleaching, using a simple microfluidic device by Van Treuren, Will, Brower, Kara K., Labanieh, Louai, Hunt, Daniel, Lensch, Sarah, Cruz, Bianca, Cartwright, Heather N., Tran, Cawa, Fordyce, Polly M.

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Single-strain behavior predicts responses to environmental pH and osmolality in the gut microbiota by Ng, Katharine M, Pannu, Sagar, Liu, Sijie, Burckhardt, Juan C, Hughes, Thad, Van Treuren, Will, Nguyen, Jen, Naqvi, Kisa, Nguyen, Bachviet, Clayton, Charlotte A, Pepin, Deanna M, Collins, Samuel R, Tropini, Carolina

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Analysis of composition of microbiomes: a novel method for studying microbial composition by Mandal, Siddhartha, Van Treuren, Will, White, Richard A., Eggesbø, Merete, Knight, Rob, Peddada, Shyamal D.

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The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans by Jones, Robert C, Karkanias, Jim, Krasnow, Mark A, Pisco, Angela Oliveira, Quake, Stephen R, Salzman, Julia, Yosef, Nir, Bulthaup, Bryan, Brown, Phillip, Harper, William, Hemenez, Marisa, Ponnusamy, Ravikumar, Salehi, Ahmad, Sanagavarapu, Bhavani A, Spallino, Eileen, Aaron, Ksenia A, Concepcion, Waldo, Gardner, James M, Kelly, Burnett, Neidlinger, Nikole, Wang, Zifa, Crasta, Sheela, Kolluru, Saroja, Morri, Maurizio, Tan, Serena Y, Travaglini, Kyle J, Xu, Chenling, Alcántara-Hernández, Marcela, Almanzar, Nicole, Antony, Jane, Beyersdorf, Benjamin, Burhan, Deviana, Calcuttawala, Kruti, Carter, Matthew M, Chan, Charles K F, Chang, Charles A, Chang, Stephen, Colville, Alex, Culver, Rebecca N, Cvijović, Ivana, D'Amato, Gaetano, Ezran, Camille, Galdos, Francisco X, Gillich, Astrid, Goodyer, William R, Hang, Yan, Hayashi, Alyssa, Houshdaran, Sahar, Huang, Xianxi, Irwin, Juan C, Jang, SoRi, Juanico, Julia Vallve, Kershner, Aaron M, Kim, Soochi, Kiss, Bernhard, Kong, William, Kumar, Maya E, Kuo, Angera H, Leylek, Rebecca, Li, Baoxiang, Loeb, Gabriel B, Lu, Wan-Jin, Mantri, Sruthi, Markovic, Maxim, McAlpine, Patrick L, de Morree, Antoine, Mrouj, Karim, Mukherjee, Shravani, Muser, Tyler, Neuhöfer, Patrick, Nguyen, Thi D, Perez, Kimberly, Phansalkar, Ragini, Puluca, Nazan, Qi, Zhen, Rao, Poorvi, Raquer-McKay, Hayley, Schaum, Nicholas, Scott, Bronwyn, Seddighzadeh, Bobak, Segal, Joe, Sen, Sushmita, Sikandar, Shaheen, Spencer, Sean P, Steffes, Lea C, Subramaniam, Varun R, Swarup, Aditi, Swift, Michael, Van Treuren, Will, Trimm, Emily, Veizades, Stefan, Vijayakumar, Sivakamasundari, Vo, Kim Chi, Vorperian, Sevahn K, Wang, Wanxin

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Depletion of microbiome-derived molecules in the host using Clostridium genetics by Guo, Chun-Jun, Allen, Breanna M, Hiam, Kamir J, Dodd, Dylan, Van Treuren, Will, Higginbottom, Steven, Nagashima, Kazuki, Fischer, Curt R, Sonnenburg, Justin L, Spitzer, Matthew H, Fischbach, Michael A

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