BioSeq-Analysis: a platform for DNA, RNA and protein sequence analysis based on machine learning approaches by Liu, Bin

MAFFT-DASH: integrated protein sequence and structural alignment by Rozewicki, John, Li, Songling, Amada, Karlou Mar, Standley, Daron M, Katoh, Kazutaka

Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data by Rapaport, Franck, Khanin, Raya, Liang, Yupu, Pirun, Mono, Krek, Azra, Zumbo, Paul, Mason, Christopher E, Socci, Nicholas D, Betel, Doron

NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy by Pruitt, Kim D., Tatusova, Tatiana, Brown, Garth R., Maglott, Donna R.

Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data by Brumfield, Kyle D., Huq, Anwar, Colwell, Rita R., Olds, James L., Leddy, Menu B.

BioSeq-Analysis2.0: an updated platform for analyzing DNA, RNA and protein sequences at sequence level and residue level based on machine learning approaches by Liu, Bin, Gao, Xin, Zhang, Hanyu

Comparative Analysis of Single-Cell RNA Sequencing Methods by Ziegenhain, Christoph, Vieth, Beate, Parekh, Swati, Reinius, Björn, Guillaumet-Adkins, Amy, Smets, Martha, Leonhardt, Heinrich, Heyn, Holger, Hellmann, Ines, Enard, Wolfgang

Human Genome Sequencing Using Unchained Base Reads on Self-Assembling DNA Nanoarrays by Drmanac, Radoje, Sparks, Andrew B., Callow, Matthew J., Halpern, Aaron L., Burns, Norman L., Kermani, Bahram G., Carnevali, Paolo, Nazarenko, Igor, Nilsen, Geoffrey B., Yeung, George, Dahl, Fredrik, Fernandez, Andres, Staker, Bryan, Pant, Krishna P., Baccash, Jonathan, Borcherding, Adam P., Brownley, Anushka, Cedeno, Ryan, Chen, Linsu, Chernikoff, Dan, Cheung, Alex, Chirita, Razvan, Curson, Benjamin, Ebert, Jessica C., Hacker, Coleen R., Hartlage, Robert, Häuser, Brian, Huang, Steve, Jiang, Yuan, Karpinchyk, Vitali, Koenig, Mark, Kong, Calvin, Landers, Tom, Le, Catherine, Liu, Jia, McBride, Celeste E., Morenzoni, Matt, Morey, Robert E., Mutch, Karl, Perazich, Helena, Perry, Kimberly, Peters, Brock A., Peterson, Joe, Pethiyagoda, Charit L., Pothuraju, Kaliprasad, Richter, Claudia, Rosenbaum, Abraham M., Roy, Shaunak, Shafto, Jay, Sharanhovich, Uladzislau, Shannon, Karen W., Sheppy, Conrad G., Sun, Michel, Thakuria, Joseph V., Tran, Anne, Vu, Dylan, Zaranek, Alexander Wait, Wu, Xiaodi, Drmanac, Snezana, Oliphant, Arnold R., Banyai, William C., Martin, Bruce, Ballinger, Dennis G., Church, George M., Reid, Clifford A.

De novo assembly of human genomes with massively parallel short read sequencing by Li, Ruiqiang, Zhu, Hongmei, Ruan, Jue, Qian, Wubin, Fang, Xiaodong, Shi, Zhongbin, Li, Yingrui, Li, Shengting, Shan, Gao, Kristiansen, Karsten, Li, Songgang, Yang, Huanming, Wang, Jian, Wang, Jun

PANTHER: Making genome‐scale phylogenetics accessible to all by Thomas, Paul D., Ebert, Dustin, Muruganujan, Anushya, Mushayahama, Tremayne, Albou, Laurent‐Philippe, Mi, Huaiyu

Lymphoma Driver Mutations in the Pathogenic Evolution of an Iconic Human Autoantibody by Singh, Mandeep, Jackson, Katherine J.L., Wang, Jing J., Schofield, Peter, Field, Matt A., Koppstein, David, Peters, Timothy J., Burnett, Deborah L., Rizzetto, Simone, Nevoltris, Damien, Masle-Farquhar, Etienne, Faulks, Megan L., Russell, Amanda, Gokal, Divya, Hanioka, Asami, Horikawa, Keisuke, Colella, Alexander D., Chataway, Timothy K., Blackburn, James, Mercer, Tim R., Langley, David B., Goodall, D. Margaret, Jefferis, Roy, Gangadharan Komala, Muralikrishna, Kelleher, Anthony D., Suan, Dan, Rischmueller, Maureen, Christ, Daniel, Brink, Robert, Luciani, Fabio, Gordon, Tom P., Goodnow, Christopher C., Reed, Joanne H.

ggseqlogo: a versatile R package for drawing sequence logos by Wagih, Omar

Benchmarking single-cell RNA-sequencing protocols for cell atlas projects by Mereu, Elisabetta, Lafzi, Atefeh, Moutinho, Catia, Ziegenhain, Christoph, McCarthy, Davis J., Álvarez-Varela, Adrián, Batlle, Eduard, Sagar, Grün, Dominic, Lau, Julia K., Boutet, Stéphane C., Sanada, Chad, Ooi, Aik, Jones, Robert C., Kaihara, Kelly, Brampton, Chris, Talaga, Yasha, Sasagawa, Yohei, Tanaka, Kaori, Hayashi, Tetsutaro, Braeuning, Caroline, Fischer, Cornelius, Sauer, Sascha, Trefzer, Timo, Conrad, Christian, Adiconis, Xian, Nguyen, Lan T., Regev, Aviv, Levin, Joshua Z., Parekh, Swati, Janjic, Aleksandar, Wange, Lucas E., Bagnoli, Johannes W., Enard, Wolfgang, Gut, Marta, Sandberg, Rickard, Nikaido, Itoshi, Gut, Ivo, Stegle, Oliver, Heyn, Holger

Accuracy and quality assessment of 454 GS-FLX Titanium pyrosequencing by Gilles, André, Meglécz, Emese, Pech, Nicolas, Ferreira, Stéphanie, Malausa, Thibaut, Martin, Jean-François

Real-time, portable genome sequencing for Ebola surveillance by Quick, Joshua, Loman, Nicholas J., Duraffour, Sophie, Simpson, Jared T., Severi, Ettore, Cowley, Lauren, Bore, Joseph Akoi, Koundouno, Raymond, Dudas, Gytis, Mikhail, Amy, Ouédraogo, Nobila, Afrough, Babak, Bah, Amadou, Baum, Jonathan H. J., Becker-Ziaja, Beate, Boettcher, Jan Peter, Cabeza-Cabrerizo, Mar, Camino-Sánchez, Álvaro, Carter, Lisa L., Doerrbecker, Juliane, Enkirch, Theresa, Dorival, Isabel García-, Hetzelt, Nicole, Hinzmann, Julia, Holm, Tobias, Kafetzopoulou, Liana Eleni, Koropogui, Michel, Kosgey, Abigael, Kuisma, Eeva, Logue, Christopher H., Mazzarelli, Antonio, Meisel, Sarah, Mertens, Marc, Michel, Janine, Ngabo, Didier, Nitzsche, Katja, Pallasch, Elisa, Patrono, Livia Victoria, Portmann, Jasmine, Repits, Johanna Gabriella, Rickett, Natasha Y., Sachse, Andreas, Singethan, Katrin, Vitoriano, Inês, Yemanaberhan, Rahel L., Zekeng, Elsa G., Racine, Trina, Bello, Alexander, Sall, Amadou Alpha, Faye, Ousmane, Faye, Oumar, Magassouba, N’Faly, Williams, Cecelia V., Amburgey, Victoria, Winona, Linda, Davis, Emily, Gerlach, Jon, Washington, Frank, Monteil, Vanessa, Jourdain, Marine, Bererd, Marion, Camara, Alimou, Somlare, Hermann, Camara, Abdoulaye, Gerard, Marianne, Bado, Guillaume, Baillet, Bernard, Delaune, Déborah, Nebie, Koumpingnin Yacouba, Diarra, Abdoulaye, Savane, Yacouba, Pallawo, Raymond Bernard, Gutierrez, Giovanna Jaramillo, Milhano, Natacha, Roger, Isabelle, Williams, Christopher J., Yattara, Facinet, Lewandowski, Kuiama, Taylor, James, Rachwal, Phillip, J. Turner, Daniel, Pollakis, Georgios, Matthews, David A., Shea, Matthew K. O’, Johnston, Andrew McD, Wilson, Duncan, Hutley, Emma, Smit, Erasmus, Wölfel, Roman, Stoecker, Kilian, Fleischmann, Erna, Gabriel, Martin, Weller, Simon A., Koivogui, Lamine, Diallo, Boubacar, Keïta, Sakoba, Rambaut, Andrew, Formenty, Pierre, Günther, Stephan, Carroll, Miles W.

Pse-in-One: a web server for generating various modes of pseudo components of DNA, RNA, and protein sequences by Liu, Bin, Liu, Fule, Wang, Xiaolong, Chen, Junjie, Fang, Longyun, Chou, Kuo-Chen

Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R by McCarthy, Davis J, Campbell, Kieran R, Lun, Aaron T L, Wills, Quin F

The EMBL-EBI search and sequence analysis tools APIs in 2019 by Madeira, Fábio, Park, Young mi, Lee, Joon, Buso, Nicola, Gur, Tamer, Madhusoodanan, Nandana, Basutkar, Prasad, Tivey, Adrian R N, Potter, Simon C, Finn, Robert D, Lopez, Rodrigo

High density DNA methylation array with single CpG site resolution by Bibikova, Marina, Barnes, Bret, Tsan, Chan, Ho, Vincent, Klotzle, Brandy, Le, Jennie M., Delano, David, Zhang, Lu, Schroth, Gary P., Gunderson, Kevin L., Fan, Jian-Bing, Shen, Richard

A Next Generation Connectivity Map: L1000 Platform and the First 1,000,000 Profiles by Subramanian, Aravind, Narayan, Rajiv, Corsello, Steven M., Peck, David D., Natoli, Ted E., Lu, Xiaodong, Gould, Joshua, Davis, John F., Tubelli, Andrew A., Asiedu, Jacob K., Lahr, David L., Hirschman, Jodi E., Liu, Zihan, Donahue, Melanie, Julian, Bina, Khan, Mariya, Wadden, David, Smith, Ian C., Lam, Daniel, Liberzon, Arthur, Toder, Courtney, Bagul, Mukta, Orzechowski, Marek, Enache, Oana M., Piccioni, Federica, Johnson, Sarah A., Lyons, Nicholas J., Berger, Alice H., Shamji, Alykhan F., Brooks, Angela N., Vrcic, Anita, Flynn, Corey, Rosains, Jacqueline, Takeda, David Y., Hu, Roger, Davison, Desiree, Lamb, Justin, Ardlie, Kristin, Hogstrom, Larson, Greenside, Peyton, Gray, Nathanael S., Clemons, Paul A., Silver, Serena, Wu, Xiaoyun, Zhao, Wen-Ning, Read-Button, Willis, Wu, Xiaohua, Haggarty, Stephen J., Ronco, Lucienne V., Boehm, Jesse S., Schreiber, Stuart L., Doench, John G., Bittker, Joshua A., Root, David E., Wong, Bang, Golub, Todd R.