Identification of micro RNAs in six solanaceous plants and their potential link with phosphate and mycorrhizal signalings

• Published in: 植物学报：英文版 2014 (12), p.1164-1178
• Main Author: Mian Gu Wei Liu Qi Meng Wenqi Zhang Aiqun Chen Shubin Sun Guohua Xu
• Format: Article
• Language: English
• Subjects: miRNA; 丛枝菌根; 信令; 微RNA; 植物生长; 聚合酶链式反应; 茄科植物; 识别
• ISSN: 1672-9072; 1744-7909

To date, only a limited number of solanaceous miRNAs have been deposited in the miRNA database. Here,Rgenome-wide bioinformatic identification of miRNAs was performed in six solanaceous plants（potato, tomato, tobacco,eggplant, pepper, and petunia）. A total of 2,239 miRNAs were identified following a range of criteria, of which 982 were from potato, 496 from tomato, 655 from tobacco, 46 from eggplant,45 were from pepper, and 15 from petunia. The sizes of miRNA families and miRNA precursor length differ in all the species.Accordingly, 620 targets were predicted, which could be functionally classified as transcription factors, metabolic enzymes, RNA and protein processing proteins, and other proteins for plant growth and development. We also showed evidence for miRNA clusters and sense and antisense miR NAs.Additionally, five Pi starvation- and one arbuscular mycorrhiza（AM）-related cis-elements were found widely distributed in the putative promoter regions of the miRNA genes. Selected miRNAs were classified into three groups based on the presence or absence of P1BS and MYCScis-elements, and their expression in response to Pi starvation and AM symbiosis was validated by quantitative reverse transcription-polymerase chain reaction（qRT-PCR）. These results show that conserved miRNAs exist in solanaceous species and they might play pivotal roles in plant growth, development, and stress responses.