Low-Energy-Barrier Proton Transfer Induced by Electron Attachment to the Guanine⋅⋅⋅Cytosine Base Pair

• Published in: Chemphyschem 2010-03, Vol.11 (4), p.880-888
• Main Authors: Szyperska, Anna, Rak, Janusz, Leszczynski, Jerzy, Li, Xiang, Ko, Yeon Jae, Wang, Haopeng, Bowen, Kit H.
• Format: Article
• Language: English
• Subjects: Biological and medical sciences; density functional calculations; Fundamental and applied biological sciences. Psychology; Intermolecular phenomena; Molecular biophysics; nucleobases; photoelectron spectroscopy; proton transfer; radical ions
• ISSN: 1439-4235; 1439-7641
• DOI: 10.1002/cphc.200900810

The photoelectron spectrum of the anion of the guanine⋅⋅⋅cytosine base apair (GC).− is recorded for the first time. The observed variation in the spectral peak‐height ratios with the source conditions suggests the presence of two or more anionic isomers. Two maxima of the broad bands in the photoelectron spectrum were measured at about 1.9 and about 2.6 eV. These values are very well reproduced by the vertical detachment energies of the B3LYP/6‐31++G(d,p) calculated low‐energy anionic structures, which are 1) the Watson–Crick base‐pair anion with proton transferred from N1 of guanine to N3 of cytosine, 2) its analogue in which the proton is transferred from N9 of guanine to N7 of guanine, and 3) the global minimum geometry, which is formed from the latter anion by rotation of guanine about the axis approximately defined by C2 of guanine and C4 of cytosine. Furthermore, a minor difference in the stabilities of the two lowest energy anions explains the experimentally observed source (temperature) dependence of the PES spectrum. A rational procedure, based on the chemistry involved in the formation of anionic dimers, which enables the low‐energy anions populated in the photoelectron spectrum to be identified is proposed. In contrast to the alternative combinatorial approach, which in the studied case would lead to carrying out quantum chemical calculations for 2000–2500 structures, the procedure described here reduces the computational problem to only 15 geometries. Base‐pair radical anions: The photoelectron spectra for the radical anions of guanine⋅⋅⋅cytosine complexes (GC).− are recorded for the first time. The vertical detachment energies, calculated for two anions separated by a small barrier related to the rotation of guanine along the axis approximately determined by the C2 atom of guanine and the C4 atom of cytosine (see picture), reproduce very well the experimental electron binding energies.