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X‐Ray Diffraction and Computer Simulation Studies of the Structure of Liquid Aliphatic Aldehydes: From Propanal to Nonanal
Synchrotron X‐ray diffraction experiments and molecular dynamics (MD) simulations have been performed on simple aliphatic aldehydes, from propanal to nonanal. The performance of the OPLS (Optimized Potentials for Liquid Simulations) all‐atom interaction potential model for aldehydes has been assesse...
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Published in: | physica status solidi (b) 2018-11, Vol.255 (11), p.n/a |
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container_title | physica status solidi (b) |
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creator | Pethes, Ildikó Temleitner, László Tomšič, Matija Jamnik, Andrej Pusztai, László |
description | Synchrotron X‐ray diffraction experiments and molecular dynamics (MD) simulations have been performed on simple aliphatic aldehydes, from propanal to nonanal. The performance of the OPLS (Optimized Potentials for Liquid Simulations) all‐atom interaction potential model for aldehydes has been assessed via direct comparison of simulated and experimental total scattering structure factors. In general, MD results reproduce the experimental data at least semi‐quantitatively. However, a slight mismatch can be observed between the two datasets in terms of the position of the main diffraction maxima. Partial radial distribution functions have also been calculated from the simulation results. Clear differences can be detected between the various OH partial radial distribution functions, depending on whether the H atom is attached to the carbon atom that is doubly bonded to the oxygen atom of the aldehyde group or not.
Total scattering structure factors of liquid aldehydes, from propanal to nonanal, as determined by high energy synchrotron X‐ray diffraction experiments, are presented. For interpreting measured data, molecular dynamics computer simulations are conducted. In general, simulation results reproduce experimental data at least semi‐quantitatively. Neighboring molecules seem to turn toward each other somewhat preferentially by their aldehyde ends. |
doi_str_mv | 10.1002/pssb.201800127 |
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Total scattering structure factors of liquid aldehydes, from propanal to nonanal, as determined by high energy synchrotron X‐ray diffraction experiments, are presented. For interpreting measured data, molecular dynamics computer simulations are conducted. In general, simulation results reproduce experimental data at least semi‐quantitatively. Neighboring molecules seem to turn toward each other somewhat preferentially by their aldehyde ends.</description><identifier>ISSN: 0370-1972</identifier><identifier>EISSN: 1521-3951</identifier><identifier>DOI: 10.1002/pssb.201800127</identifier><language>eng</language><subject>aldehydes ; molecular dynamics simulation ; structure ; X‐ray diffraction</subject><ispartof>physica status solidi (b), 2018-11, Vol.255 (11), p.n/a</ispartof><rights>2018 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3177-4e13d45245f74b0c360089900d642573e27733f73670b48417f616e15ddb6a3c3</citedby><cites>FETCH-LOGICAL-c3177-4e13d45245f74b0c360089900d642573e27733f73670b48417f616e15ddb6a3c3</cites><orcidid>0000-0003-3411-9766 ; 0000-0002-1931-1584</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids></links><search><creatorcontrib>Pethes, Ildikó</creatorcontrib><creatorcontrib>Temleitner, László</creatorcontrib><creatorcontrib>Tomšič, Matija</creatorcontrib><creatorcontrib>Jamnik, Andrej</creatorcontrib><creatorcontrib>Pusztai, László</creatorcontrib><title>X‐Ray Diffraction and Computer Simulation Studies of the Structure of Liquid Aliphatic Aldehydes: From Propanal to Nonanal</title><title>physica status solidi (b)</title><description>Synchrotron X‐ray diffraction experiments and molecular dynamics (MD) simulations have been performed on simple aliphatic aldehydes, from propanal to nonanal. The performance of the OPLS (Optimized Potentials for Liquid Simulations) all‐atom interaction potential model for aldehydes has been assessed via direct comparison of simulated and experimental total scattering structure factors. In general, MD results reproduce the experimental data at least semi‐quantitatively. However, a slight mismatch can be observed between the two datasets in terms of the position of the main diffraction maxima. Partial radial distribution functions have also been calculated from the simulation results. Clear differences can be detected between the various OH partial radial distribution functions, depending on whether the H atom is attached to the carbon atom that is doubly bonded to the oxygen atom of the aldehyde group or not.
Total scattering structure factors of liquid aldehydes, from propanal to nonanal, as determined by high energy synchrotron X‐ray diffraction experiments, are presented. For interpreting measured data, molecular dynamics computer simulations are conducted. In general, simulation results reproduce experimental data at least semi‐quantitatively. Neighboring molecules seem to turn toward each other somewhat preferentially by their aldehyde ends.</description><subject>aldehydes</subject><subject>molecular dynamics simulation</subject><subject>structure</subject><subject>X‐ray diffraction</subject><issn>0370-1972</issn><issn>1521-3951</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><recordid>eNqFkMFKxDAYhIMouK5ePecFuv5J2mbrbV1dFRYVq-CtpE3CRtqmJi1S8OAj-Iw-ia0revT0zz_MN4dB6JjAjADQk8b7fEaBzAEI5TtoQiJKApZEZBdNgHEISMLpPjrw_hkAOGFkgt6ePt8_7kWPz43WThStsTUWtcRLWzVdqxxOTdWV4ttP204a5bHVuN2o4XVd0XZOjcbavHRG4kVpms2QLgYl1aaXyp_ilbMVvnO2EbUocWvxja1HeYj2tCi9Ovq5U_S4unhYXgXr28vr5WIdFIxwHoSKMBlGNIw0D3MoWAwwTxIAGYc04kxRzhnTnMUc8nAeEq5jEisSSZnHghVsimbb3sJZ753SWeNMJVyfEcjG7bJxu-x3uwFItsCrKVX_Tzq7S9OzP_YLOAN0gQ</recordid><startdate>201811</startdate><enddate>201811</enddate><creator>Pethes, Ildikó</creator><creator>Temleitner, László</creator><creator>Tomšič, Matija</creator><creator>Jamnik, Andrej</creator><creator>Pusztai, László</creator><scope>AAYXX</scope><scope>CITATION</scope><orcidid>https://orcid.org/0000-0003-3411-9766</orcidid><orcidid>https://orcid.org/0000-0002-1931-1584</orcidid></search><sort><creationdate>201811</creationdate><title>X‐Ray Diffraction and Computer Simulation Studies of the Structure of Liquid Aliphatic Aldehydes: From Propanal to Nonanal</title><author>Pethes, Ildikó ; Temleitner, László ; Tomšič, Matija ; Jamnik, Andrej ; Pusztai, László</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3177-4e13d45245f74b0c360089900d642573e27733f73670b48417f616e15ddb6a3c3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>aldehydes</topic><topic>molecular dynamics simulation</topic><topic>structure</topic><topic>X‐ray diffraction</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Pethes, Ildikó</creatorcontrib><creatorcontrib>Temleitner, László</creatorcontrib><creatorcontrib>Tomšič, Matija</creatorcontrib><creatorcontrib>Jamnik, Andrej</creatorcontrib><creatorcontrib>Pusztai, László</creatorcontrib><collection>CrossRef</collection><jtitle>physica status solidi (b)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Pethes, Ildikó</au><au>Temleitner, László</au><au>Tomšič, Matija</au><au>Jamnik, Andrej</au><au>Pusztai, László</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>X‐Ray Diffraction and Computer Simulation Studies of the Structure of Liquid Aliphatic Aldehydes: From Propanal to Nonanal</atitle><jtitle>physica status solidi (b)</jtitle><date>2018-11</date><risdate>2018</risdate><volume>255</volume><issue>11</issue><epage>n/a</epage><issn>0370-1972</issn><eissn>1521-3951</eissn><abstract>Synchrotron X‐ray diffraction experiments and molecular dynamics (MD) simulations have been performed on simple aliphatic aldehydes, from propanal to nonanal. The performance of the OPLS (Optimized Potentials for Liquid Simulations) all‐atom interaction potential model for aldehydes has been assessed via direct comparison of simulated and experimental total scattering structure factors. In general, MD results reproduce the experimental data at least semi‐quantitatively. However, a slight mismatch can be observed between the two datasets in terms of the position of the main diffraction maxima. Partial radial distribution functions have also been calculated from the simulation results. Clear differences can be detected between the various OH partial radial distribution functions, depending on whether the H atom is attached to the carbon atom that is doubly bonded to the oxygen atom of the aldehyde group or not.
Total scattering structure factors of liquid aldehydes, from propanal to nonanal, as determined by high energy synchrotron X‐ray diffraction experiments, are presented. For interpreting measured data, molecular dynamics computer simulations are conducted. In general, simulation results reproduce experimental data at least semi‐quantitatively. Neighboring molecules seem to turn toward each other somewhat preferentially by their aldehyde ends.</abstract><doi>10.1002/pssb.201800127</doi><tpages>7</tpages><orcidid>https://orcid.org/0000-0003-3411-9766</orcidid><orcidid>https://orcid.org/0000-0002-1931-1584</orcidid></addata></record> |
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subjects | aldehydes molecular dynamics simulation structure X‐ray diffraction |
title | X‐Ray Diffraction and Computer Simulation Studies of the Structure of Liquid Aliphatic Aldehydes: From Propanal to Nonanal |
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