QSAR study of Nav1.7 antagonists by multiple linear regression method based on genetic algorithm (GA–MLR)

• Published in: Medicinal chemistry research 2014, Vol.23 (5), p.2264-2276
• Main Authors: Pourbasheer, Eslam, Aalizadeh, Reza, Ganjali, Mohammad Reza, Norouzi, Parviz, Shadmanesh, Javad, Methenitis, Constantinos
• Format: Article
• Language: English
• Subjects: Biochemistry; Biomedical and Life Sciences; Biomedicine; Cell Biology; Original Research; Pharmacology/Toxicology
• ISSN: 1054-2523; 1554-8120
• DOI: 10.1007/s00044-013-0821-z

In this work, a quantitative structure–activity relationship study was developed to predict the Na V 1.7 antagonist activities. A data set consisted of 36 compounds with known Na V 1.7 antagonist activities was split into two subsets of training set and test set using hierarchical clustering technique. To select the most respective descriptors among the pool of descriptors, genetic algorithm was applied. The model based on selected descriptors through genetic algorithm (GA) was built by employing multiple linear regression (MLR) method. The squared correlation coefficient ( R train 2 ) of 0.813, squared cross-validated correlation coefficient for leave-one-out ( Q LOO 2 ) of 0.699 and root mean square error of 0.214 were calculated for the training set compounds by GA–MLR model. The proposed model performed good predictive ability when it was verified by internal and external validation tests. The results of predictive model can lead to design better compounds with high Na V 1.7 antagonist activities.