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Quantitative 1H NMR metabolome profiling of Thai Jasmine rice (Oryza sativa) reveals primary metabolic response during brown planthopper infestation
Brown planthopper (BPH; Nilaparvata lugens ) is a phloem feeding insect which is one of the most serious threats to rice crops in many countries throughout Asia. 1 H NMR spectroscopy, combined with chemometrics, was used to analyze the polar metabolome from leaf extracts of Thai Jasmine rice (brown...
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| Published in: | Metabolomics 2015-12, Vol.11 (6), p.1640-1655 |
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| container_title | Metabolomics |
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| creator | Uawisetwathana, Umaporn Graham, Stewart F. Kamolsukyunyong, Wintai Sukhaket, Wissarut Klanchui, Amornpan Toojinda, Theerayut Vanavichit, Apichart Karoonuthaisiri, Nitsara Elliott, Christopher T. |
| description | Brown planthopper (BPH;
Nilaparvata lugens
) is a phloem feeding insect which is one of the most serious threats to rice crops in many countries throughout Asia.
1
H NMR spectroscopy, combined with chemometrics, was used to analyze the polar metabolome from leaf extracts of Thai Jasmine rice (brown planthopper (BPH)-susceptible KD) and its BPH resistant isogenic lines (BPH-resistant IL7 and BPH-resistant
+
IL308 varieties) with and without BPH infestation at various time points (days 1, 2, 3, 4 and 8). Physiological changes of the rice isogenic lines were different based on the quantitative trait loci of BPH resistance. Multivariate models were capable of distinguishing between the susceptible and the resistant rice varieties throughout the infestation. The concentration of 10 metabolites were significantly altered (
p
|
| doi_str_mv | 10.1007/s11306-015-0817-4 |
| format | article |
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Nilaparvata lugens
) is a phloem feeding insect which is one of the most serious threats to rice crops in many countries throughout Asia.
1
H NMR spectroscopy, combined with chemometrics, was used to analyze the polar metabolome from leaf extracts of Thai Jasmine rice (brown planthopper (BPH)-susceptible KD) and its BPH resistant isogenic lines (BPH-resistant IL7 and BPH-resistant
+
IL308 varieties) with and without BPH infestation at various time points (days 1, 2, 3, 4 and 8). Physiological changes of the rice isogenic lines were different based on the quantitative trait loci of BPH resistance. Multivariate models were capable of distinguishing between the susceptible and the resistant rice varieties throughout the infestation. The concentration of 10 metabolites were significantly altered (
p
< 0.05) between the infested and the control groups of each examined rice variety. Metabolic pathway analysis suggested that BPH infestation could perturb transamination during the early stages of infestation (days 1–3) for all rice varieties. In addition, the IL7 and IL308 varieties responded earlier (day 3) than the KD variety (day 8) by perturbing amino acid metabolism, shikimate and gluconeogenesis pathways. By day 8 of the infestation, the KD cultivar responded by activating the amino acid-mediated-de novo pathway whereas the IL308 variety activated the purine and pyrimidine compound-mediated-salvage pathway for nucleotide biosynthesis. This study has identified, for the first time, several potential metabolic pathways for acclimatization and defense mechanisms against BPH infestation. These findings provide a valuable, first insight into BPH resistance mechanisms in Thai Jasmine rice.</description><identifier>ISSN: 1573-3882</identifier><identifier>EISSN: 1573-3890</identifier><identifier>DOI: 10.1007/s11306-015-0817-4</identifier><language>eng</language><publisher>New York: Springer US</publisher><subject>Biochemistry ; Biomedical and Life Sciences ; Biomedicine ; Cell Biology ; Developmental Biology ; Life Sciences ; Molecular Medicine ; Original Article</subject><ispartof>Metabolomics, 2015-12, Vol.11 (6), p.1640-1655</ispartof><rights>Springer Science+Business Media New York 2015</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c1994-92dbfa844c8c9746b3d588282f3c0ab17b605ff7952d8ca554e2b7ee5dc59ddb3</citedby><cites>FETCH-LOGICAL-c1994-92dbfa844c8c9746b3d588282f3c0ab17b605ff7952d8ca554e2b7ee5dc59ddb3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids></links><search><creatorcontrib>Uawisetwathana, Umaporn</creatorcontrib><creatorcontrib>Graham, Stewart F.</creatorcontrib><creatorcontrib>Kamolsukyunyong, Wintai</creatorcontrib><creatorcontrib>Sukhaket, Wissarut</creatorcontrib><creatorcontrib>Klanchui, Amornpan</creatorcontrib><creatorcontrib>Toojinda, Theerayut</creatorcontrib><creatorcontrib>Vanavichit, Apichart</creatorcontrib><creatorcontrib>Karoonuthaisiri, Nitsara</creatorcontrib><creatorcontrib>Elliott, Christopher T.</creatorcontrib><title>Quantitative 1H NMR metabolome profiling of Thai Jasmine rice (Oryza sativa) reveals primary metabolic response during brown planthopper infestation</title><title>Metabolomics</title><addtitle>Metabolomics</addtitle><description>Brown planthopper (BPH;
Nilaparvata lugens
) is a phloem feeding insect which is one of the most serious threats to rice crops in many countries throughout Asia.
1
H NMR spectroscopy, combined with chemometrics, was used to analyze the polar metabolome from leaf extracts of Thai Jasmine rice (brown planthopper (BPH)-susceptible KD) and its BPH resistant isogenic lines (BPH-resistant IL7 and BPH-resistant
+
IL308 varieties) with and without BPH infestation at various time points (days 1, 2, 3, 4 and 8). Physiological changes of the rice isogenic lines were different based on the quantitative trait loci of BPH resistance. Multivariate models were capable of distinguishing between the susceptible and the resistant rice varieties throughout the infestation. The concentration of 10 metabolites were significantly altered (
p
< 0.05) between the infested and the control groups of each examined rice variety. Metabolic pathway analysis suggested that BPH infestation could perturb transamination during the early stages of infestation (days 1–3) for all rice varieties. In addition, the IL7 and IL308 varieties responded earlier (day 3) than the KD variety (day 8) by perturbing amino acid metabolism, shikimate and gluconeogenesis pathways. By day 8 of the infestation, the KD cultivar responded by activating the amino acid-mediated-de novo pathway whereas the IL308 variety activated the purine and pyrimidine compound-mediated-salvage pathway for nucleotide biosynthesis. This study has identified, for the first time, several potential metabolic pathways for acclimatization and defense mechanisms against BPH infestation. These findings provide a valuable, first insight into BPH resistance mechanisms in Thai Jasmine rice.</description><subject>Biochemistry</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>Cell Biology</subject><subject>Developmental Biology</subject><subject>Life Sciences</subject><subject>Molecular Medicine</subject><subject>Original Article</subject><issn>1573-3882</issn><issn>1573-3890</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><recordid>eNp9kMFOwzAQRCMEEqXwAdx8hEPATuw6PiIEFFSoQOVs2Y5NXSV2ZKdF5Tv4YBy1cOS0K63e7Mxk2TmCVwhCeh0RKuEkh4jksEI0xwfZCBFa5mXF4OHfXhXH2UmMKwgxZhSOsu_XtXC97UVvNxqgKXh5fgOt7oX0jW816II3trHuA3gDFkthwZOIrXUaBKs0uJiH7ZcAccDFJQh6o0UTE2VbEba_QlalS-y8ixrU6zCoyeA_Heia9Hzpu04HYJ3RcfDh3Wl2ZJKMPtvPcfZ-f7e4neaz-cPj7c0sV4gxnLOilkZUGKtKMYonsqxJSlgVplRQSETlBBJjKCNFXSlBCNaFpFqTWhFW17IcZ2inq4KPMWjD98Y5gnyole9q5alWPtTKcWKKHRO7IYgOfOXXwSWb_0A_VZt-sg</recordid><startdate>201512</startdate><enddate>201512</enddate><creator>Uawisetwathana, Umaporn</creator><creator>Graham, Stewart F.</creator><creator>Kamolsukyunyong, Wintai</creator><creator>Sukhaket, Wissarut</creator><creator>Klanchui, Amornpan</creator><creator>Toojinda, Theerayut</creator><creator>Vanavichit, Apichart</creator><creator>Karoonuthaisiri, Nitsara</creator><creator>Elliott, Christopher T.</creator><general>Springer US</general><scope>AAYXX</scope><scope>CITATION</scope></search><sort><creationdate>201512</creationdate><title>Quantitative 1H NMR metabolome profiling of Thai Jasmine rice (Oryza sativa) reveals primary metabolic response during brown planthopper infestation</title><author>Uawisetwathana, Umaporn ; Graham, Stewart F. ; Kamolsukyunyong, Wintai ; Sukhaket, Wissarut ; Klanchui, Amornpan ; Toojinda, Theerayut ; Vanavichit, Apichart ; Karoonuthaisiri, Nitsara ; Elliott, Christopher T.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c1994-92dbfa844c8c9746b3d588282f3c0ab17b605ff7952d8ca554e2b7ee5dc59ddb3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Biochemistry</topic><topic>Biomedical and Life Sciences</topic><topic>Biomedicine</topic><topic>Cell Biology</topic><topic>Developmental Biology</topic><topic>Life Sciences</topic><topic>Molecular Medicine</topic><topic>Original Article</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Uawisetwathana, Umaporn</creatorcontrib><creatorcontrib>Graham, Stewart F.</creatorcontrib><creatorcontrib>Kamolsukyunyong, Wintai</creatorcontrib><creatorcontrib>Sukhaket, Wissarut</creatorcontrib><creatorcontrib>Klanchui, Amornpan</creatorcontrib><creatorcontrib>Toojinda, Theerayut</creatorcontrib><creatorcontrib>Vanavichit, Apichart</creatorcontrib><creatorcontrib>Karoonuthaisiri, Nitsara</creatorcontrib><creatorcontrib>Elliott, Christopher T.</creatorcontrib><collection>CrossRef</collection><jtitle>Metabolomics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Uawisetwathana, Umaporn</au><au>Graham, Stewart F.</au><au>Kamolsukyunyong, Wintai</au><au>Sukhaket, Wissarut</au><au>Klanchui, Amornpan</au><au>Toojinda, Theerayut</au><au>Vanavichit, Apichart</au><au>Karoonuthaisiri, Nitsara</au><au>Elliott, Christopher T.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Quantitative 1H NMR metabolome profiling of Thai Jasmine rice (Oryza sativa) reveals primary metabolic response during brown planthopper infestation</atitle><jtitle>Metabolomics</jtitle><stitle>Metabolomics</stitle><date>2015-12</date><risdate>2015</risdate><volume>11</volume><issue>6</issue><spage>1640</spage><epage>1655</epage><pages>1640-1655</pages><issn>1573-3882</issn><eissn>1573-3890</eissn><abstract>Brown planthopper (BPH;
Nilaparvata lugens
) is a phloem feeding insect which is one of the most serious threats to rice crops in many countries throughout Asia.
1
H NMR spectroscopy, combined with chemometrics, was used to analyze the polar metabolome from leaf extracts of Thai Jasmine rice (brown planthopper (BPH)-susceptible KD) and its BPH resistant isogenic lines (BPH-resistant IL7 and BPH-resistant
+
IL308 varieties) with and without BPH infestation at various time points (days 1, 2, 3, 4 and 8). Physiological changes of the rice isogenic lines were different based on the quantitative trait loci of BPH resistance. Multivariate models were capable of distinguishing between the susceptible and the resistant rice varieties throughout the infestation. The concentration of 10 metabolites were significantly altered (
p
< 0.05) between the infested and the control groups of each examined rice variety. Metabolic pathway analysis suggested that BPH infestation could perturb transamination during the early stages of infestation (days 1–3) for all rice varieties. In addition, the IL7 and IL308 varieties responded earlier (day 3) than the KD variety (day 8) by perturbing amino acid metabolism, shikimate and gluconeogenesis pathways. By day 8 of the infestation, the KD cultivar responded by activating the amino acid-mediated-de novo pathway whereas the IL308 variety activated the purine and pyrimidine compound-mediated-salvage pathway for nucleotide biosynthesis. This study has identified, for the first time, several potential metabolic pathways for acclimatization and defense mechanisms against BPH infestation. These findings provide a valuable, first insight into BPH resistance mechanisms in Thai Jasmine rice.</abstract><cop>New York</cop><pub>Springer US</pub><doi>10.1007/s11306-015-0817-4</doi><tpages>16</tpages></addata></record> |
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| subjects | Biochemistry Biomedical and Life Sciences Biomedicine Cell Biology Developmental Biology Life Sciences Molecular Medicine Original Article |
| title | Quantitative 1H NMR metabolome profiling of Thai Jasmine rice (Oryza sativa) reveals primary metabolic response during brown planthopper infestation |
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