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An end-to-end approach to combine attention feature extraction and Gaussian Process models for deep multiple instance learning in CT hemorrhage detection
Intracranial hemorrhage (ICH) is a serious life-threatening emergency caused by blood leakage inside the brain. Radiologists usually confirm the presence of ICH by analyzing computed tomography (CT) scans, so, developing an automated diagnosis system that can process this type of images has become a...
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Published in: | Expert systems with applications 2024-04, Vol.240, p.122296, Article 122296 |
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description | Intracranial hemorrhage (ICH) is a serious life-threatening emergency caused by blood leakage inside the brain. Radiologists usually confirm the presence of ICH by analyzing computed tomography (CT) scans, so, developing an automated diagnosis system that can process this type of images has become an important research problem. One of the main challenges to apply AI algorithms in this setting is the lack of labeled data. To mitigate the labeling burden, Multiple Instance Learning (MIL) algorithms group instances into bags, relying solely on bag-level labels for model training. Due to their capacity to handle uncertainty and deliver accurate predictions, Gaussian Processes (GPs) stand out as promising classifiers for MIL problems. Recent research has also demonstrated the effectiveness of combining attention mechanisms with GPs for ICH detection. Nonetheless, existing methods have a notable limitation: they train the attention mechanism and the GP separately, resulting in suboptimal feature extraction for GP-based classification. In this study, we introduce an innovative end-to-end MIL model that concurrently trains the CNN backbone and attention mechanism along with the GP classifier. Our approach enhances the robustness and accuracy of bag predictions by optimizing feature extraction for GP-based classification. We validate our method experimentally by focusing on two ICH detection datasets. Our results reveal a significant performance advantage in terms of accuracy, F1-score, precision, and ROC-AUC score over existing MIL approaches, especially two-stage GP approaches. Additionally, we offer empirical insights into the functionality and effectiveness of our novel model.
•End-to-end multiple instance learning (MIL) method for hemorrhage detection.•It combines attention layer, CNN and Gaussian Process for robust training.•The end-to-end MIL approach outperforms the two-phase MIL training strategy. |
doi_str_mv | 10.1016/j.eswa.2023.122296 |
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•End-to-end multiple instance learning (MIL) method for hemorrhage detection.•It combines attention layer, CNN and Gaussian Process for robust training.•The end-to-end MIL approach outperforms the two-phase MIL training strategy.</description><identifier>ISSN: 0957-4174</identifier><identifier>EISSN: 1873-6793</identifier><identifier>DOI: 10.1016/j.eswa.2023.122296</identifier><language>eng</language><publisher>Elsevier Ltd</publisher><subject>Attention ; CT hemorrhage detection ; End-to-end multiple instance learning ; Gaussian process</subject><ispartof>Expert systems with applications, 2024-04, Vol.240, p.122296, Article 122296</ispartof><rights>2023 Elsevier Ltd</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c300t-5edd330d49f2bacf089d4a5e87714e23590ca6ede764c0cae7ae6c2afac593373</citedby><cites>FETCH-LOGICAL-c300t-5edd330d49f2bacf089d4a5e87714e23590ca6ede764c0cae7ae6c2afac593373</cites><orcidid>0000-0001-5823-0050 ; 0000-0003-2793-0083 ; 0000-0003-4694-8588 ; 0000-0003-3325-507X ; 0000-0003-4554-0070 ; 0000-0001-6980-9746 ; 0000-0003-2965-0624</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27903,27904</link.rule.ids></links><search><creatorcontrib>Pérez-Cano, Jose</creatorcontrib><creatorcontrib>Wu, Yunan</creatorcontrib><creatorcontrib>Schmidt, Arne</creatorcontrib><creatorcontrib>López-Pérez, Miguel</creatorcontrib><creatorcontrib>Morales-Álvarez, Pablo</creatorcontrib><creatorcontrib>Molina, Rafael</creatorcontrib><creatorcontrib>Katsaggelos, Aggelos K.</creatorcontrib><title>An end-to-end approach to combine attention feature extraction and Gaussian Process models for deep multiple instance learning in CT hemorrhage detection</title><title>Expert systems with applications</title><description>Intracranial hemorrhage (ICH) is a serious life-threatening emergency caused by blood leakage inside the brain. Radiologists usually confirm the presence of ICH by analyzing computed tomography (CT) scans, so, developing an automated diagnosis system that can process this type of images has become an important research problem. One of the main challenges to apply AI algorithms in this setting is the lack of labeled data. To mitigate the labeling burden, Multiple Instance Learning (MIL) algorithms group instances into bags, relying solely on bag-level labels for model training. Due to their capacity to handle uncertainty and deliver accurate predictions, Gaussian Processes (GPs) stand out as promising classifiers for MIL problems. Recent research has also demonstrated the effectiveness of combining attention mechanisms with GPs for ICH detection. Nonetheless, existing methods have a notable limitation: they train the attention mechanism and the GP separately, resulting in suboptimal feature extraction for GP-based classification. In this study, we introduce an innovative end-to-end MIL model that concurrently trains the CNN backbone and attention mechanism along with the GP classifier. Our approach enhances the robustness and accuracy of bag predictions by optimizing feature extraction for GP-based classification. We validate our method experimentally by focusing on two ICH detection datasets. Our results reveal a significant performance advantage in terms of accuracy, F1-score, precision, and ROC-AUC score over existing MIL approaches, especially two-stage GP approaches. Additionally, we offer empirical insights into the functionality and effectiveness of our novel model.
•End-to-end multiple instance learning (MIL) method for hemorrhage detection.•It combines attention layer, CNN and Gaussian Process for robust training.•The end-to-end MIL approach outperforms the two-phase MIL training strategy.</description><subject>Attention</subject><subject>CT hemorrhage detection</subject><subject>End-to-end multiple instance learning</subject><subject>Gaussian process</subject><issn>0957-4174</issn><issn>1873-6793</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><recordid>eNp9kMtOwzAURC0EEuXxA6z8Ayl-JHEjsUEVLwkJFrC2LvYNdZXYke3y-BT-FrdlzWquRjqjO0PIBWdzznh7uZ5j-oS5YELOuRCiaw_IjC-UrFrVyUMyY12jqpqr-picpLRmjCvG1Iz8XHuK3lY5VEUoTFMMYFY0B2rC-OY8UsgZfXbB0x4hbyJS_MoRzM6CAt3BJiUHnj7HYDAlOgaLQ6J9iNQiTnTcDNlNA1LnUwZvkA4I0Tv_Xhy6fKErHEOMK3jHAmTcRZ-Rox6GhOd_ekpeb29elvfV49Pdw_L6sTKSsVw1aK2UzNZdL97A9GzR2RoaXCjFaxSy6ZiBFi2qtjblRAXYGgE9mKaTUslTIva5JoaUIvZ6im6E-K0509tx9Vpvx9XbcfV-3AJd7aHSEz8cRp2Mw9LMulje1za4__BfbV6Hhg</recordid><startdate>20240415</startdate><enddate>20240415</enddate><creator>Pérez-Cano, Jose</creator><creator>Wu, Yunan</creator><creator>Schmidt, Arne</creator><creator>López-Pérez, Miguel</creator><creator>Morales-Álvarez, Pablo</creator><creator>Molina, Rafael</creator><creator>Katsaggelos, Aggelos K.</creator><general>Elsevier Ltd</general><scope>AAYXX</scope><scope>CITATION</scope><orcidid>https://orcid.org/0000-0001-5823-0050</orcidid><orcidid>https://orcid.org/0000-0003-2793-0083</orcidid><orcidid>https://orcid.org/0000-0003-4694-8588</orcidid><orcidid>https://orcid.org/0000-0003-3325-507X</orcidid><orcidid>https://orcid.org/0000-0003-4554-0070</orcidid><orcidid>https://orcid.org/0000-0001-6980-9746</orcidid><orcidid>https://orcid.org/0000-0003-2965-0624</orcidid></search><sort><creationdate>20240415</creationdate><title>An end-to-end approach to combine attention feature extraction and Gaussian Process models for deep multiple instance learning in CT hemorrhage detection</title><author>Pérez-Cano, Jose ; Wu, Yunan ; Schmidt, Arne ; López-Pérez, Miguel ; Morales-Álvarez, Pablo ; Molina, Rafael ; Katsaggelos, Aggelos K.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c300t-5edd330d49f2bacf089d4a5e87714e23590ca6ede764c0cae7ae6c2afac593373</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Attention</topic><topic>CT hemorrhage detection</topic><topic>End-to-end multiple instance learning</topic><topic>Gaussian process</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Pérez-Cano, Jose</creatorcontrib><creatorcontrib>Wu, Yunan</creatorcontrib><creatorcontrib>Schmidt, Arne</creatorcontrib><creatorcontrib>López-Pérez, Miguel</creatorcontrib><creatorcontrib>Morales-Álvarez, Pablo</creatorcontrib><creatorcontrib>Molina, Rafael</creatorcontrib><creatorcontrib>Katsaggelos, Aggelos K.</creatorcontrib><collection>CrossRef</collection><jtitle>Expert systems with applications</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Pérez-Cano, Jose</au><au>Wu, Yunan</au><au>Schmidt, Arne</au><au>López-Pérez, Miguel</au><au>Morales-Álvarez, Pablo</au><au>Molina, Rafael</au><au>Katsaggelos, Aggelos K.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>An end-to-end approach to combine attention feature extraction and Gaussian Process models for deep multiple instance learning in CT hemorrhage detection</atitle><jtitle>Expert systems with applications</jtitle><date>2024-04-15</date><risdate>2024</risdate><volume>240</volume><spage>122296</spage><pages>122296-</pages><artnum>122296</artnum><issn>0957-4174</issn><eissn>1873-6793</eissn><abstract>Intracranial hemorrhage (ICH) is a serious life-threatening emergency caused by blood leakage inside the brain. Radiologists usually confirm the presence of ICH by analyzing computed tomography (CT) scans, so, developing an automated diagnosis system that can process this type of images has become an important research problem. One of the main challenges to apply AI algorithms in this setting is the lack of labeled data. To mitigate the labeling burden, Multiple Instance Learning (MIL) algorithms group instances into bags, relying solely on bag-level labels for model training. Due to their capacity to handle uncertainty and deliver accurate predictions, Gaussian Processes (GPs) stand out as promising classifiers for MIL problems. Recent research has also demonstrated the effectiveness of combining attention mechanisms with GPs for ICH detection. Nonetheless, existing methods have a notable limitation: they train the attention mechanism and the GP separately, resulting in suboptimal feature extraction for GP-based classification. In this study, we introduce an innovative end-to-end MIL model that concurrently trains the CNN backbone and attention mechanism along with the GP classifier. Our approach enhances the robustness and accuracy of bag predictions by optimizing feature extraction for GP-based classification. We validate our method experimentally by focusing on two ICH detection datasets. Our results reveal a significant performance advantage in terms of accuracy, F1-score, precision, and ROC-AUC score over existing MIL approaches, especially two-stage GP approaches. Additionally, we offer empirical insights into the functionality and effectiveness of our novel model.
•End-to-end multiple instance learning (MIL) method for hemorrhage detection.•It combines attention layer, CNN and Gaussian Process for robust training.•The end-to-end MIL approach outperforms the two-phase MIL training strategy.</abstract><pub>Elsevier Ltd</pub><doi>10.1016/j.eswa.2023.122296</doi><orcidid>https://orcid.org/0000-0001-5823-0050</orcidid><orcidid>https://orcid.org/0000-0003-2793-0083</orcidid><orcidid>https://orcid.org/0000-0003-4694-8588</orcidid><orcidid>https://orcid.org/0000-0003-3325-507X</orcidid><orcidid>https://orcid.org/0000-0003-4554-0070</orcidid><orcidid>https://orcid.org/0000-0001-6980-9746</orcidid><orcidid>https://orcid.org/0000-0003-2965-0624</orcidid></addata></record> |
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subjects | Attention CT hemorrhage detection End-to-end multiple instance learning Gaussian process |
title | An end-to-end approach to combine attention feature extraction and Gaussian Process models for deep multiple instance learning in CT hemorrhage detection |
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