Targeting double genes in multiplex PCR for discriminating bovine, buffalo and porcine materials in food chain

• Published in: Food control 2017-03, Vol.73, p.175-184
• Main Authors: Hossain, M.A. Motalib, Ali, Md. Eaqub, Hamid, Sharifah Bee Abd, Asing, Mustafa, Shuhaimi, Desa, Mohd Nasir Mohd, Zaidul, I.S.M.
• Format: Article
• Language: English
• Subjects: Decomposed specimens; Double gene-targets; Economic; Meatball products; Multiplex PCR; Religious and health concern; Short-length DNA targets
• ISSN: 0956-7135; 1873-7129
• DOI: 10.1016/j.foodcont.2016.08.008

Beef, buffalo and pork are the major meat of economic, religious and health concern. Current methods to authenticate these materials in food chain are based on mainly single gene targets which are susceptible to break down by food processing treatments. We, for the first time, described here a double gene targeting short-amplicon length multiplex polymerase chain reaction assay for discriminating bovine, buffalo and porcine materials in a single assay platform. The advantage of the assay is evidenced in terms of fidelity, cost and time since it is highly unlikely that two different targets would be missing even in a decomposed specimen. Detection of multiple targets in a single assay definitely saves analytical cost and time. Mitochondrial cytochrome b (cytb) and ND5 genes were targeted and six different targets (length: 90–146 bp), two for each of cow (120 and 106bp), buffalo (90 and 138bp) and pig (73 and 146bp), were amplified from raw, boiled, autoclaved and microwaved cooked meat under pure and mixed matrices. The detection limit was 0.02 ng DNA under pure states and 0.1% meat in binary mixtures and meatball products. Screening of Malaysian meatball products revealed all beef products were buffalo positive in which 35% were totally replaced. In contrast, all pork products were found uncontaminated from beef and buffalo. •First report of double gene targeted multiplex PCR to discriminate bovine, buffalo and porcine.•Complementation of a missing target through the detection of an alternative target.•Assay validation under processed and commercial matrices.•Trustworthy, fast and cost-saving method for bovine, buffalo and porcine authentication.