High Performance Computing in Biomedical Applications

This paper presents the results of the development of a biomedical software system at the Nizhni Novgorod State University High Performance Computing Competence Center. We consider four main fields: plasma simulation, heart activity simulation, brain sensing simulation, molecular dynamics simulation...

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Bibliographic Details
Published in:Procedia computer science 2013, Vol.18, p.10-19
Main Authors: Bastrakov, S., Meyerov, I., Gergel, V., Gonoskov, A., Gorshkov, A., Efimenko, E., Ivanchenko, M., Kirillin, M., Malova, A., Osipov, G., Petrov, V., Surmin, I., Vildemanov, A.
Format: Article
Language:English
Subjects:
brain sensing simulation
GPU computing
heart activity simulation
highly scalable software
large-scale problems
molecular dynamics simulation
plasma simulation
scientific computing
software for heterogeneous clusters
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Summary:This paper presents the results of the development of a biomedical software system at the Nizhni Novgorod State University High Performance Computing Competence Center. We consider four main fields: plasma simulation, heart activity simulation, brain sensing simulation, molecular dynamics simulation. The software system is aimed at large-scale simulation on cluster systems with high efficiency and scalability. We demonstrate current results of the numerical simulation, analyze performance and propose the ways to improve efficiency.
ISSN:1877-0509
1877-0509
DOI:10.1016/j.procs.2013.05.164