New Mechanism of Gemcitabine and Its Phosphates: DNA Polymerization Disruption via 3′–5′ Exonuclease Inhibition

• Published in: Biochemistry (Easton) 2020-11, Vol.59 (45), p.4344-4352
• Main Authors: Yang, Shuzhang, Luo, Danyan, Li, Na, Li, Chuncheng, Tang, Shuo, Huang, Zhen
• Format: Article
• Language: English
• Subjects: Base Sequence; Deoxycytidine - analogs & derivatives; Deoxycytidine - chemistry; Deoxycytidine - pharmacology; DNA - chemistry; DNA - genetics; Enzyme Inhibitors - chemistry; Enzyme Inhibitors - pharmacology; Exonucleases - antagonists & inhibitors; Phosphates - chemistry; Polymerization - drug effects
• ISSN: 0006-2960; 1520-4995
• DOI: 10.1021/acs.biochem.0c00543

Gemcitabine (dFdC), a modified deoxycytidine (dC) widely used in tumor treatment, is a prodrug that is phosphorylated to generate mono-, di-, and triphosphates. The triphosphate (dFdCTP) is incorporated into DNA to terminate DNA synthesis in cancer. Some incorporated dFdC nucleotides can be partially removed by the 3′–5′ exonuclease activity, namely its editing function, and the others escape the editing. However, whether there is an active mechanism for dFdC to escape the editing remains unclear. We have first discovered that unlike dFdC, its mono-, di-, and triphosphates can inhibit the 3′–5′ exonuclease of DNA polymerase I, suppress editing, and allow the active escaping mechanism, whereas its polymerase activity is not remarkably affected. As such, these phosphates can prevent the removal of the incorporated dFdC residue, thereby actively blocking DNA extension and synthesis. The inhibition efficiency of these phosphates follows the increased order of the mono-, di-, and triphosphates of gemcitabine (dFdC < dFdCMP < dFdCDP < dFdCTP). In addition, after the deletion of the 3′–5′ exonuclease of cellular DNA polymerase I, the Escherichia coli mutant is more sensitive to dFdCTP than is wild-type E. coli. Our new discovery of the ability of these dFdC phosphates to inhibit exonuclease activity suggests a novel anticancer mechanism of gemcitabine and its phosphate derivatives.