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A Tutorial Review on the Methodologies and Theories Utilized to Handle Proteins toward Obtaining Single Protein Crystals
Proteins are functional macromolecules in living organisms including mammals and thus human beings. They are involved in almost all biological processes, either as the main functional domains or as catalysts (enzymes). Owing to their vitality, proteins have attracted extensive research interest from...
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Published in: | Crystal growth & design 2024-08, Vol.24 (16), p.6865-6887 |
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description | Proteins are functional macromolecules in living organisms including mammals and thus human beings. They are involved in almost all biological processes, either as the main functional domains or as catalysts (enzymes). Owing to their vitality, proteins have attracted extensive research interest from different structural perspectives. Precise determination of the three-dimensional structures of proteins is crucial; otherwise, the structure–function relationships would be ambiguous. Macromolecular crystallographers have been trying to determine protein structures since the 1950s. According to the protein data bank (PDB) on February 13, 2024, 215 684 structures of proteins, nucleic acids, and other biological macromolecules have been determined. Most of these structures (84.6%) were solved using X-ray diffraction (XRD), which requires the growth of protein microcrystals. Only 0.108% and 0.104% of all structures were solved using electron and neutron crystallography methods, which require the growth of nanocrystals and mesoscopic crystals, respectively. Other methodologies such as nuclear magnetic resonance (NMR) (6.5%), electron microscopy (EM) (8.5%), and other biochemical methodologies ( |
doi_str_mv | 10.1021/acs.cgd.4c00221 |
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They are involved in almost all biological processes, either as the main functional domains or as catalysts (enzymes). Owing to their vitality, proteins have attracted extensive research interest from different structural perspectives. Precise determination of the three-dimensional structures of proteins is crucial; otherwise, the structure–function relationships would be ambiguous. Macromolecular crystallographers have been trying to determine protein structures since the 1950s. According to the protein data bank (PDB) on February 13, 2024, 215 684 structures of proteins, nucleic acids, and other biological macromolecules have been determined. Most of these structures (84.6%) were solved using X-ray diffraction (XRD), which requires the growth of protein microcrystals. Only 0.108% and 0.104% of all structures were solved using electron and neutron crystallography methods, which require the growth of nanocrystals and mesoscopic crystals, respectively. Other methodologies such as nuclear magnetic resonance (NMR) (6.5%), electron microscopy (EM) (8.5%), and other biochemical methodologies (<1%) have contributed to solving the remaining structures. This implies the necessity of growing protein crystals, for which prior procedures are required. This tutorial Review covers the structural aspects and some of the methodologies and theories used on the route to obtaining the starting purified protein sample that would later be induced to assemble into functional assemblies up to protein crystals to reveal the structure–function relationship of these entities through the usage of biochemical methods and eventually macromolecular crystallography. In particular, this Review touches on the procedures used to purify proteins and to crystallize them, with a special mention of the recent efforts reported for understanding of the actual mechanism behind protein nucleation, crystal growth, the incorporation of impurities, and the methods developed to facilitate the crystallization of proteins into high-quality crystals: processes widely known as the bottleneck in the determination of the macromolecular structures of proteins using state-of-art macromolecular crystallography methodologies that rather made the process, after crystal obtention, quite straightforward.</description><identifier>ISSN: 1528-7483</identifier><identifier>EISSN: 1528-7505</identifier><identifier>DOI: 10.1021/acs.cgd.4c00221</identifier><language>eng</language><publisher>American Chemical Society</publisher><ispartof>Crystal growth & design, 2024-08, Vol.24 (16), p.6865-6887</ispartof><rights>2024 The Author. 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In particular, this Review touches on the procedures used to purify proteins and to crystallize them, with a special mention of the recent efforts reported for understanding of the actual mechanism behind protein nucleation, crystal growth, the incorporation of impurities, and the methods developed to facilitate the crystallization of proteins into high-quality crystals: processes widely known as the bottleneck in the determination of the macromolecular structures of proteins using state-of-art macromolecular crystallography methodologies that rather made the process, after crystal obtention, quite straightforward.</abstract><pub>American Chemical Society</pub><doi>10.1021/acs.cgd.4c00221</doi><tpages>23</tpages><orcidid>https://orcid.org/0000-0001-5517-6693</orcidid></addata></record> |
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title | A Tutorial Review on the Methodologies and Theories Utilized to Handle Proteins toward Obtaining Single Protein Crystals |
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