Inhibition of Aβ 16-22 Aggregation by [TEA] + [Ms] - Follows Weakening of the Hydrophobic Core and Sequestration of Peptides in Ionic Liquid Nanodomains

• Published in: The journal of physical chemistry. B 2024-09, Vol.128 (38), p.9143-9150
• Main Authors: Lee, Pei-Yin, Gotla, Suhas, Matysiak, Silvina
• Format: Article
• Language: English
• Subjects: Amyloid beta-Peptides - antagonists & inhibitors; Amyloid beta-Peptides - chemistry; Amyloid beta-Peptides - metabolism; Hydrophobic and Hydrophilic Interactions; Ionic Liquids - chemistry; Molecular Dynamics Simulation; Nanostructures - chemistry; Peptide Fragments - chemistry; Peptide Fragments - metabolism; Protein Aggregates - drug effects
• ISSN: 1520-6106; 1520-5207
• DOI: 10.1021/acs.jpcb.4c05135

We developed a coarse-grained model for the protic ionic liquid, triethylammonium mesylate ([TEA] [Ms] ), to characterize its inhibitory effects on amyloid aggregation using the K LVFFAE fragment of the amyloid-β (Aβ ) as a model amyloidogenic peptide. In agreement with previous experiments, coarse-grained molecular dynamics simulations showed that increasing concentrations of [TEA] [Ms] in aqueous media led to increasingly small Aβ aggregates with low beta-sheet contents. The cause of [TEA] [Ms] 's inhibition of peptide aggregation was found to be a result of two interrelated effects. At a local scale, the enrichment of interactions between [TEA] cations and hydrophobic phenylalanine side chains weakened the hydrophobic cores of amyloid aggregates, resulting in poorly ordered structures. At a global level, peptides tended to localize at the interfaces of IL-rich nanostructures with water. At high IL concentrations, when the IL-water interface was large or fragmented, Aβ peptides were dispersed in the simulation cell, sometimes sequestered at unaggregated monomeric states. Together, these phenomena underlie [TEA] [Ms] 's inhibition of amyloid aggregation. This work addresses the critical lack of knowledge on the mechanisms of protein-ionic liquid interactions and may have broader implications for industrial applications.