Cyanide Binding to Hexacoordinate Cyanobacterial Hemoglobins:  Hydrogen-Bonding Network and Heme Pocket Rearrangement in Ferric H117A Synechocystis Hemoglobin

• Published in: Biochemistry (Easton) 2004-10, Vol.43 (39), p.12622-12633
• Main Authors: Vu, B. Christie, Nothnagel, Henry J, Vuletich, David A, Falzone, Christopher J, Lecomte, Juliette T. J
• Format: Article
• Language: English
• Subjects: Alanine - genetics; Bacterial Proteins - chemistry; Bacterial Proteins - genetics; Binding Sites - genetics; Cyanobacteria - chemistry; Cyanobacteria - genetics; Heme - chemistry; Heme - metabolism; Hemeproteins - chemistry; Hemoglobins - chemistry; Hemoglobins - genetics; Hemoglobins - metabolism; Histidine - genetics; Hot Temperature; Hydrogen Bonding; Imidazoles - metabolism; Iron - metabolism; Mutagenesis, Site-Directed; Nitrogen Isotopes - metabolism; Nuclear Magnetic Resonance, Biomolecular; Potassium Cyanide - chemistry; Potassium Cyanide - metabolism; Protein Binding - genetics; Protein Denaturation; Recombinant Proteins - chemistry; Recombinant Proteins - metabolism; Truncated Hemoglobins
• ISSN: 0006-2960; 1520-4995
• DOI: 10.1021/bi048726l

The truncated hemoglobin (Hb) from the cyanobacterium Synechocystis sp. PCC 6803 is a bis-histidyl hexacoordinate complex in the absence of exogenous ligands. This protein can form a covalent cross-link between His117 in the H-helix and the heme 2-vinyl group. Cross-linking, the physiological importance of which has not been established, is avoided with the His117Ala substitution. In the present work, H117A Hb was used to explore exogenous ligand binding to the heme group. NMR and thermal denaturation data showed that the replacement was of little consequence to the structural and thermodynamic properties of ferric Synechocystis Hb. It did, however, decelerate the association of cyanide ions with the heme iron. Full complexation required hours, instead of minutes, of incubation at optical and NMR concentrations. At neutral pH and in the presence of excess cyanide, binding occurred with a first-order dependence on cyanide concentration, eliminating distal histidine decoordination as the rate-limiting step. The cyanide complex of the H117A variant was characterized for the conformational changes occurring as the histidine on the distal side, His46 (E10), was displaced. Extensive rearrangement allowed Tyr22 (B10) to insert in the heme pocket and Gln43 (E7) and Gln47 (E11) to come in contact with it. H-bond formation to the bound cyanide was identified in solution with the use of 1H2O/2H2O mixtures. Cyanide binding also resulted in a change in the ratio of heme orientational isomers, in a likely manifestation of heme environment reshaping. Similar observations were made with the related Synechococcus sp. PCC 7002 H117A Hb, except that cyanide binding was rapid in this protein. In both cases, the 15N chemical shift of bound cyanide was reminiscent of that in peroxidases and the orientation of the proximal histidine was as in other truncated Hbs. The ensemble of the data provided insight into the structural cooperativity of the heme pocket scaffold and pointed to the reactive 117 site of Synechocystis Hb as a potential determinant of biophysical and, perhaps, functional properties.