Loading…

What Happens to Salt-Bridges in Nonaqueous Environments:  Insights from Quantum Mechanics Calculations

To examine the effect of solvent environment on protein salt-bridges, we performed high-level ab initio molecular orbital calculations in the gas phase and in three different solvents on a salt-bridge as modeled by formate and guanidinium ions. The energy difference between the neutral hydrogen-bond...

Full description

Saved in:
Bibliographic Details
Published in:Journal of the American Chemical Society 1996-11, Vol.118 (45), p.11237-11243
Main Authors: Zheng, Ya-Jun, Ornstein, Rick L
Format: Article
Language:English
Citations: Items that this one cites
Items that cite this one
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by cdi_FETCH-LOGICAL-a457t-7a095d4d29b650fba8b0eed24328794d511b8e1f1f29ba3321d98eb13fa4ebcd3
cites cdi_FETCH-LOGICAL-a457t-7a095d4d29b650fba8b0eed24328794d511b8e1f1f29ba3321d98eb13fa4ebcd3
container_end_page 11243
container_issue 45
container_start_page 11237
container_title Journal of the American Chemical Society
container_volume 118
creator Zheng, Ya-Jun
Ornstein, Rick L
description To examine the effect of solvent environment on protein salt-bridges, we performed high-level ab initio molecular orbital calculations in the gas phase and in three different solvents on a salt-bridge as modeled by formate and guanidinium ions. The energy difference between the neutral hydrogen-bonded complex and the zwitterionic form and the interconversion barrier between them are investigated in detail at RHF/6-31G*, RHF/6-311+G**, MP2/6-31G*, and MP2/6-311+G** levels. In the gas phase, the neutral conventional hydrogen-bonded complex is predicted to be favored at all four levels of theory and there is a small barrier for the interconversion. In a nonpolar, hydrophobic solvent like CCl4, the energy difference between these two forms is small and the barrier that separates them is also low, but the neutral hydrogen-bonded complex still seems to be slightly favored. However, in polar solvents like DMSO and water, the zwitterionic form becomes much more favored. In polar solvents, the barrier for conversion of the neutral hydrogen-bonded form to the zwitterionic form is small at the Hartree−Fock level, but it disappears at the correlated level (MP2). The implication of these findings toward stabilizing an enzyme in nonaqueous solvents is briefly discussed.
doi_str_mv 10.1021/ja960041o
format article
fullrecord <record><control><sourceid>istex_cross</sourceid><recordid>TN_cdi_crossref_primary_10_1021_ja960041o</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>ark_67375_TPS_DF3M0H8S_G</sourcerecordid><originalsourceid>FETCH-LOGICAL-a457t-7a095d4d29b650fba8b0eed24328794d511b8e1f1f29ba3321d98eb13fa4ebcd3</originalsourceid><addsrcrecordid>eNpt0LtOwzAUBmALgUQpDLyBFwaGgO3c2aD0JrVc1CJG6yRxGpfELraDYGPlNXkSgoo6MR0d6dMv_T9Cp5RcUMLo5RrSiJCA6j3UoyEjXkhZtI96hBDmxUnkH6Ija9fdG7CE9lD1XIHDE9hshLLYabyA2nk3RhYrYbFU-E4reG2Fbi0eqjdptGqEcvbq-_MLT5WVq8pZXBrd4McWlGsbPBd5BUrmFg-gztsanNTKHqODEmorTv5uHz2NhsvBxJvdj6eD65kHQRg7LwaShkVQsDSLQlJmkGREiIIFPkviNChCSrNE0JKWnQDfZ7RIE5FRv4RAZHnh99H5Njc32lojSr4xsgHzwSnhvxPx3USd9bZWWifedxDMC49iPw758mHBb0f-nEySBR93_mzrIbd8rVujuib_5P4A6ql24w</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype></control><display><type>article</type><title>What Happens to Salt-Bridges in Nonaqueous Environments:  Insights from Quantum Mechanics Calculations</title><source>American Chemical Society:Jisc Collections:American Chemical Society Read &amp; Publish Agreement 2022-2024 (Reading list)</source><creator>Zheng, Ya-Jun ; Ornstein, Rick L</creator><creatorcontrib>Zheng, Ya-Jun ; Ornstein, Rick L</creatorcontrib><description>To examine the effect of solvent environment on protein salt-bridges, we performed high-level ab initio molecular orbital calculations in the gas phase and in three different solvents on a salt-bridge as modeled by formate and guanidinium ions. The energy difference between the neutral hydrogen-bonded complex and the zwitterionic form and the interconversion barrier between them are investigated in detail at RHF/6-31G*, RHF/6-311+G**, MP2/6-31G*, and MP2/6-311+G** levels. In the gas phase, the neutral conventional hydrogen-bonded complex is predicted to be favored at all four levels of theory and there is a small barrier for the interconversion. In a nonpolar, hydrophobic solvent like CCl4, the energy difference between these two forms is small and the barrier that separates them is also low, but the neutral hydrogen-bonded complex still seems to be slightly favored. However, in polar solvents like DMSO and water, the zwitterionic form becomes much more favored. In polar solvents, the barrier for conversion of the neutral hydrogen-bonded form to the zwitterionic form is small at the Hartree−Fock level, but it disappears at the correlated level (MP2). The implication of these findings toward stabilizing an enzyme in nonaqueous solvents is briefly discussed.</description><identifier>ISSN: 0002-7863</identifier><identifier>EISSN: 1520-5126</identifier><identifier>DOI: 10.1021/ja960041o</identifier><language>eng</language><publisher>American Chemical Society</publisher><ispartof>Journal of the American Chemical Society, 1996-11, Vol.118 (45), p.11237-11243</ispartof><rights>Copyright © 1996 American Chemical Society</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-a457t-7a095d4d29b650fba8b0eed24328794d511b8e1f1f29ba3321d98eb13fa4ebcd3</citedby><cites>FETCH-LOGICAL-a457t-7a095d4d29b650fba8b0eed24328794d511b8e1f1f29ba3321d98eb13fa4ebcd3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27923,27924</link.rule.ids></links><search><creatorcontrib>Zheng, Ya-Jun</creatorcontrib><creatorcontrib>Ornstein, Rick L</creatorcontrib><title>What Happens to Salt-Bridges in Nonaqueous Environments:  Insights from Quantum Mechanics Calculations</title><title>Journal of the American Chemical Society</title><addtitle>J. Am. Chem. Soc</addtitle><description>To examine the effect of solvent environment on protein salt-bridges, we performed high-level ab initio molecular orbital calculations in the gas phase and in three different solvents on a salt-bridge as modeled by formate and guanidinium ions. The energy difference between the neutral hydrogen-bonded complex and the zwitterionic form and the interconversion barrier between them are investigated in detail at RHF/6-31G*, RHF/6-311+G**, MP2/6-31G*, and MP2/6-311+G** levels. In the gas phase, the neutral conventional hydrogen-bonded complex is predicted to be favored at all four levels of theory and there is a small barrier for the interconversion. In a nonpolar, hydrophobic solvent like CCl4, the energy difference between these two forms is small and the barrier that separates them is also low, but the neutral hydrogen-bonded complex still seems to be slightly favored. However, in polar solvents like DMSO and water, the zwitterionic form becomes much more favored. In polar solvents, the barrier for conversion of the neutral hydrogen-bonded form to the zwitterionic form is small at the Hartree−Fock level, but it disappears at the correlated level (MP2). The implication of these findings toward stabilizing an enzyme in nonaqueous solvents is briefly discussed.</description><issn>0002-7863</issn><issn>1520-5126</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1996</creationdate><recordtype>article</recordtype><recordid>eNpt0LtOwzAUBmALgUQpDLyBFwaGgO3c2aD0JrVc1CJG6yRxGpfELraDYGPlNXkSgoo6MR0d6dMv_T9Cp5RcUMLo5RrSiJCA6j3UoyEjXkhZtI96hBDmxUnkH6Ija9fdG7CE9lD1XIHDE9hshLLYabyA2nk3RhYrYbFU-E4reG2Fbi0eqjdptGqEcvbq-_MLT5WVq8pZXBrd4McWlGsbPBd5BUrmFg-gztsanNTKHqODEmorTv5uHz2NhsvBxJvdj6eD65kHQRg7LwaShkVQsDSLQlJmkGREiIIFPkviNChCSrNE0JKWnQDfZ7RIE5FRv4RAZHnh99H5Njc32lojSr4xsgHzwSnhvxPx3USd9bZWWifedxDMC49iPw758mHBb0f-nEySBR93_mzrIbd8rVujuib_5P4A6ql24w</recordid><startdate>19961113</startdate><enddate>19961113</enddate><creator>Zheng, Ya-Jun</creator><creator>Ornstein, Rick L</creator><general>American Chemical Society</general><scope>BSCLL</scope><scope>AAYXX</scope><scope>CITATION</scope></search><sort><creationdate>19961113</creationdate><title>What Happens to Salt-Bridges in Nonaqueous Environments:  Insights from Quantum Mechanics Calculations</title><author>Zheng, Ya-Jun ; Ornstein, Rick L</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a457t-7a095d4d29b650fba8b0eed24328794d511b8e1f1f29ba3321d98eb13fa4ebcd3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1996</creationdate><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Zheng, Ya-Jun</creatorcontrib><creatorcontrib>Ornstein, Rick L</creatorcontrib><collection>Istex</collection><collection>CrossRef</collection><jtitle>Journal of the American Chemical Society</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zheng, Ya-Jun</au><au>Ornstein, Rick L</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>What Happens to Salt-Bridges in Nonaqueous Environments:  Insights from Quantum Mechanics Calculations</atitle><jtitle>Journal of the American Chemical Society</jtitle><addtitle>J. Am. Chem. Soc</addtitle><date>1996-11-13</date><risdate>1996</risdate><volume>118</volume><issue>45</issue><spage>11237</spage><epage>11243</epage><pages>11237-11243</pages><issn>0002-7863</issn><eissn>1520-5126</eissn><abstract>To examine the effect of solvent environment on protein salt-bridges, we performed high-level ab initio molecular orbital calculations in the gas phase and in three different solvents on a salt-bridge as modeled by formate and guanidinium ions. The energy difference between the neutral hydrogen-bonded complex and the zwitterionic form and the interconversion barrier between them are investigated in detail at RHF/6-31G*, RHF/6-311+G**, MP2/6-31G*, and MP2/6-311+G** levels. In the gas phase, the neutral conventional hydrogen-bonded complex is predicted to be favored at all four levels of theory and there is a small barrier for the interconversion. In a nonpolar, hydrophobic solvent like CCl4, the energy difference between these two forms is small and the barrier that separates them is also low, but the neutral hydrogen-bonded complex still seems to be slightly favored. However, in polar solvents like DMSO and water, the zwitterionic form becomes much more favored. In polar solvents, the barrier for conversion of the neutral hydrogen-bonded form to the zwitterionic form is small at the Hartree−Fock level, but it disappears at the correlated level (MP2). The implication of these findings toward stabilizing an enzyme in nonaqueous solvents is briefly discussed.</abstract><pub>American Chemical Society</pub><doi>10.1021/ja960041o</doi><tpages>7</tpages></addata></record>
fulltext fulltext
identifier ISSN: 0002-7863
ispartof Journal of the American Chemical Society, 1996-11, Vol.118 (45), p.11237-11243
issn 0002-7863
1520-5126
language eng
recordid cdi_crossref_primary_10_1021_ja960041o
source American Chemical Society:Jisc Collections:American Chemical Society Read & Publish Agreement 2022-2024 (Reading list)
title What Happens to Salt-Bridges in Nonaqueous Environments:  Insights from Quantum Mechanics Calculations
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-11T20%3A30%3A52IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-istex_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=What%20Happens%20to%20Salt-Bridges%20in%20Nonaqueous%20Environments:%E2%80%89%20Insights%20from%20Quantum%20Mechanics%20Calculations&rft.jtitle=Journal%20of%20the%20American%20Chemical%20Society&rft.au=Zheng,%20Ya-Jun&rft.date=1996-11-13&rft.volume=118&rft.issue=45&rft.spage=11237&rft.epage=11243&rft.pages=11237-11243&rft.issn=0002-7863&rft.eissn=1520-5126&rft_id=info:doi/10.1021/ja960041o&rft_dat=%3Cistex_cross%3Eark_67375_TPS_DF3M0H8S_G%3C/istex_cross%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-a457t-7a095d4d29b650fba8b0eed24328794d511b8e1f1f29ba3321d98eb13fa4ebcd3%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_id=info:pmid/&rfr_iscdi=true