Loading…

Extended continuum configurational bias Monte Carlo methods for simulation of flexible molecules

The continuum configurational bias (CCB) Monte Carlo method has been extended to perform elementary moves that involve the rearrangement of inner segments of flexible chains. When regrowing inner sites, the continuity with the rest of the chain is ensured by disregarding those configurations that wo...

Full description

Saved in:
Bibliographic Details
Published in:The Journal of chemical physics 1995-02, Vol.102 (6), p.2636-2652
Main Authors: Escobedo, Fernando A., de Pablo, Juan J.
Format: Article
Language:English
Citations: Items that this one cites
Items that cite this one
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by cdi_FETCH-LOGICAL-c261t-307b5b4a71d976b1f723c93dbb64a43c4c2be2bc2a5f1dd0a2caab231c194de73
cites cdi_FETCH-LOGICAL-c261t-307b5b4a71d976b1f723c93dbb64a43c4c2be2bc2a5f1dd0a2caab231c194de73
container_end_page 2652
container_issue 6
container_start_page 2636
container_title The Journal of chemical physics
container_volume 102
creator Escobedo, Fernando A.
de Pablo, Juan J.
description The continuum configurational bias (CCB) Monte Carlo method has been extended to perform elementary moves that involve the rearrangement of inner segments of flexible chains. When regrowing inner sites, the continuity with the rest of the chain is ensured by disregarding those configurations that would imply an unrealistic elongation of the bonds once the chain is reconstructed. The formalism presented here also allows the simulation of branched chains and crosslinked-network structures. The Monte Carlo elementary moves proposed in this work are used in conjunction with an alternative method of preferential sampling in which the segments to be rearranged are chosen from a preselected region of space. The performance and capabilities of the new moves are compared to those of standard CCB and crank-shaft algorithms for simulation of melts and solutions of hard-sphere chains at high densities. Our results indicate that the methods presented here provide a fast relaxation of the bond orientation and the end-to-end orientation autocorrelation functions. Our isobaric simulations for homopolymer chains of up to 51 sites and for concentrated solutions of chain molecules in the monomer are consistent with previously reported data obtained by approximate molecular dynamics methods and by conventional Monte Carlo methods. However, small disagreements with existing data are identified at high densities. These PV results are also compared to the predictions of two recent equations of state. This comparison shows the presence of some small but systematic deviations.
doi_str_mv 10.1063/1.468695
format article
fullrecord <record><control><sourceid>crossref</sourceid><recordid>TN_cdi_crossref_primary_10_1063_1_468695</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>10_1063_1_468695</sourcerecordid><originalsourceid>FETCH-LOGICAL-c261t-307b5b4a71d976b1f723c93dbb64a43c4c2be2bc2a5f1dd0a2caab231c194de73</originalsourceid><addsrcrecordid>eNotkM1KAzEYRYMoOFbBR8jSzdR8SSZpllKqFSpudD3mVyOZiSQzUN9ea13dC_dwFwehayBLIILdwpKLlVDdCWqArFQrhSKnqCGEQqsEEefootZPQghIyhv0ttlPfnTeYZvHKY7zPBxaiO9z0VPMo07YRF3x0-_s8VqXlPHgp4_sKg654BqHOf2ROAcckt9HkzwecvJ2Tr5eorOgU_VX_7lAr_ebl_W23T0_PK7vdq2lAqaWEWk6w7UEp6QwECRlVjFnjOCaM8stNZ4aS3UXwDmiqdXaUAYWFHdesgW6Of7akmstPvRfJQ66fPdA-oOZHvqjGfYDRztYJA</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype></control><display><type>article</type><title>Extended continuum configurational bias Monte Carlo methods for simulation of flexible molecules</title><source>American Institute of Physics (AIP) Publications</source><creator>Escobedo, Fernando A. ; de Pablo, Juan J.</creator><creatorcontrib>Escobedo, Fernando A. ; de Pablo, Juan J.</creatorcontrib><description>The continuum configurational bias (CCB) Monte Carlo method has been extended to perform elementary moves that involve the rearrangement of inner segments of flexible chains. When regrowing inner sites, the continuity with the rest of the chain is ensured by disregarding those configurations that would imply an unrealistic elongation of the bonds once the chain is reconstructed. The formalism presented here also allows the simulation of branched chains and crosslinked-network structures. The Monte Carlo elementary moves proposed in this work are used in conjunction with an alternative method of preferential sampling in which the segments to be rearranged are chosen from a preselected region of space. The performance and capabilities of the new moves are compared to those of standard CCB and crank-shaft algorithms for simulation of melts and solutions of hard-sphere chains at high densities. Our results indicate that the methods presented here provide a fast relaxation of the bond orientation and the end-to-end orientation autocorrelation functions. Our isobaric simulations for homopolymer chains of up to 51 sites and for concentrated solutions of chain molecules in the monomer are consistent with previously reported data obtained by approximate molecular dynamics methods and by conventional Monte Carlo methods. However, small disagreements with existing data are identified at high densities. These PV results are also compared to the predictions of two recent equations of state. This comparison shows the presence of some small but systematic deviations.</description><identifier>ISSN: 0021-9606</identifier><identifier>EISSN: 1089-7690</identifier><identifier>DOI: 10.1063/1.468695</identifier><language>eng</language><ispartof>The Journal of chemical physics, 1995-02, Vol.102 (6), p.2636-2652</ispartof><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c261t-307b5b4a71d976b1f723c93dbb64a43c4c2be2bc2a5f1dd0a2caab231c194de73</citedby><cites>FETCH-LOGICAL-c261t-307b5b4a71d976b1f723c93dbb64a43c4c2be2bc2a5f1dd0a2caab231c194de73</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,778,780,27901,27902</link.rule.ids></links><search><creatorcontrib>Escobedo, Fernando A.</creatorcontrib><creatorcontrib>de Pablo, Juan J.</creatorcontrib><title>Extended continuum configurational bias Monte Carlo methods for simulation of flexible molecules</title><title>The Journal of chemical physics</title><description>The continuum configurational bias (CCB) Monte Carlo method has been extended to perform elementary moves that involve the rearrangement of inner segments of flexible chains. When regrowing inner sites, the continuity with the rest of the chain is ensured by disregarding those configurations that would imply an unrealistic elongation of the bonds once the chain is reconstructed. The formalism presented here also allows the simulation of branched chains and crosslinked-network structures. The Monte Carlo elementary moves proposed in this work are used in conjunction with an alternative method of preferential sampling in which the segments to be rearranged are chosen from a preselected region of space. The performance and capabilities of the new moves are compared to those of standard CCB and crank-shaft algorithms for simulation of melts and solutions of hard-sphere chains at high densities. Our results indicate that the methods presented here provide a fast relaxation of the bond orientation and the end-to-end orientation autocorrelation functions. Our isobaric simulations for homopolymer chains of up to 51 sites and for concentrated solutions of chain molecules in the monomer are consistent with previously reported data obtained by approximate molecular dynamics methods and by conventional Monte Carlo methods. However, small disagreements with existing data are identified at high densities. These PV results are also compared to the predictions of two recent equations of state. This comparison shows the presence of some small but systematic deviations.</description><issn>0021-9606</issn><issn>1089-7690</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1995</creationdate><recordtype>article</recordtype><recordid>eNotkM1KAzEYRYMoOFbBR8jSzdR8SSZpllKqFSpudD3mVyOZiSQzUN9ea13dC_dwFwehayBLIILdwpKLlVDdCWqArFQrhSKnqCGEQqsEEefootZPQghIyhv0ttlPfnTeYZvHKY7zPBxaiO9z0VPMo07YRF3x0-_s8VqXlPHgp4_sKg654BqHOf2ROAcckt9HkzwecvJ2Tr5eorOgU_VX_7lAr_ebl_W23T0_PK7vdq2lAqaWEWk6w7UEp6QwECRlVjFnjOCaM8stNZ4aS3UXwDmiqdXaUAYWFHdesgW6Of7akmstPvRfJQ66fPdA-oOZHvqjGfYDRztYJA</recordid><startdate>19950208</startdate><enddate>19950208</enddate><creator>Escobedo, Fernando A.</creator><creator>de Pablo, Juan J.</creator><scope>AAYXX</scope><scope>CITATION</scope></search><sort><creationdate>19950208</creationdate><title>Extended continuum configurational bias Monte Carlo methods for simulation of flexible molecules</title><author>Escobedo, Fernando A. ; de Pablo, Juan J.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c261t-307b5b4a71d976b1f723c93dbb64a43c4c2be2bc2a5f1dd0a2caab231c194de73</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1995</creationdate><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Escobedo, Fernando A.</creatorcontrib><creatorcontrib>de Pablo, Juan J.</creatorcontrib><collection>CrossRef</collection><jtitle>The Journal of chemical physics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Escobedo, Fernando A.</au><au>de Pablo, Juan J.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Extended continuum configurational bias Monte Carlo methods for simulation of flexible molecules</atitle><jtitle>The Journal of chemical physics</jtitle><date>1995-02-08</date><risdate>1995</risdate><volume>102</volume><issue>6</issue><spage>2636</spage><epage>2652</epage><pages>2636-2652</pages><issn>0021-9606</issn><eissn>1089-7690</eissn><abstract>The continuum configurational bias (CCB) Monte Carlo method has been extended to perform elementary moves that involve the rearrangement of inner segments of flexible chains. When regrowing inner sites, the continuity with the rest of the chain is ensured by disregarding those configurations that would imply an unrealistic elongation of the bonds once the chain is reconstructed. The formalism presented here also allows the simulation of branched chains and crosslinked-network structures. The Monte Carlo elementary moves proposed in this work are used in conjunction with an alternative method of preferential sampling in which the segments to be rearranged are chosen from a preselected region of space. The performance and capabilities of the new moves are compared to those of standard CCB and crank-shaft algorithms for simulation of melts and solutions of hard-sphere chains at high densities. Our results indicate that the methods presented here provide a fast relaxation of the bond orientation and the end-to-end orientation autocorrelation functions. Our isobaric simulations for homopolymer chains of up to 51 sites and for concentrated solutions of chain molecules in the monomer are consistent with previously reported data obtained by approximate molecular dynamics methods and by conventional Monte Carlo methods. However, small disagreements with existing data are identified at high densities. These PV results are also compared to the predictions of two recent equations of state. This comparison shows the presence of some small but systematic deviations.</abstract><doi>10.1063/1.468695</doi><tpages>17</tpages><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 0021-9606
ispartof The Journal of chemical physics, 1995-02, Vol.102 (6), p.2636-2652
issn 0021-9606
1089-7690
language eng
recordid cdi_crossref_primary_10_1063_1_468695
source American Institute of Physics (AIP) Publications
title Extended continuum configurational bias Monte Carlo methods for simulation of flexible molecules
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-08T03%3A17%3A28IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-crossref&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Extended%20continuum%20configurational%20bias%20Monte%20Carlo%20methods%20for%20simulation%20of%20flexible%20molecules&rft.jtitle=The%20Journal%20of%20chemical%20physics&rft.au=Escobedo,%20Fernando%20A.&rft.date=1995-02-08&rft.volume=102&rft.issue=6&rft.spage=2636&rft.epage=2652&rft.pages=2636-2652&rft.issn=0021-9606&rft.eissn=1089-7690&rft_id=info:doi/10.1063/1.468695&rft_dat=%3Ccrossref%3E10_1063_1_468695%3C/crossref%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c261t-307b5b4a71d976b1f723c93dbb64a43c4c2be2bc2a5f1dd0a2caab231c194de73%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_id=info:pmid/&rfr_iscdi=true