The complete mtDNA genome of Erythroculter ilishaeformis: genome characterization and phylogenetic analysis

The complete mitochondrial genome sequence of the hybrid of Erythroculter ilishaeformis was first determined by a PCR-based sequencing method in this study. The mitochondrial was 16 624 bp in length, including 13 protein genes, two ribosomal RNA (rRNA) genes, 22 transfer RNA (tRNA) genes and one con...

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Bibliographic Details
Published in:Mitochondrial DNA. Part B. Resources 2016-01, Vol.1 (1), p.39-40
Main Authors: Li, Sha, Liu, Xueqing, Bai, Yunqin, Huang, Tao, Wang, Junhong, Qu, Huantao, Chen, Lei, Jiang, Wei
Format: Article
Language:English
Subjects:
Base composition
Cyprinidae
Erythroculter
Erythroculter ilishaeformis
Genomes
Mitochondria
Mitochondrial DNA
mitochondrial genome
Mitogenome Announcement
Nucleotide sequence
phylogenetic relationships
Phylogenetics
Phylogeny
rRNA
Transfer RNA
tRNA
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Summary:The complete mitochondrial genome sequence of the hybrid of Erythroculter ilishaeformis was first determined by a PCR-based sequencing method in this study. The mitochondrial was 16 624 bp in length, including 13 protein genes, two ribosomal RNA (rRNA) genes, 22 transfer RNA (tRNA) genes and one control region. All genes were encoded on the heavy strain except for ND6 and eight tRNA genes. Base composition of the heavy strain was A (30.09%), T (24.96%), C (27.67%), G (16.41%) and with A + T bias of 55.05%. All the genes in E. ilishaeformis were distributed on the H-strand, except for the ND6 subunit gene and nine tRNA genes which were encoded on the L-strand. The phylogenetic relationships of 14 Cyprinidae species were reconstructed based on the complete mtDNA sequences using the MEGA inference method.
ISSN:2380-2359
2380-2359
DOI:10.1080/23802359.2015.1137812