The complete chloroplast genome of Acer catalpifolium (Sapindaceae), a rare and endangered plant in Southwest China

Acer catalpifolium is a rare and endangered species in southwestern China. In this study, the complete chloroplast genome sequence of A. catalpifolium was characterized by de novo assembly using high-throughput sequencing. The length of the whole chloroplast genome was 156,225 bp, containing a large...

Full description

Saved in:
Bibliographic Details
Published in:Mitochondrial DNA. Part B. Resources 2019-01, Vol.4 (1), p.2037-2038
Main Authors: Wang, Ao, He, Jian, Xu, Shenjian, Peng, Linlin, Zhao, Liangcheng
Format: Article
Language:English
Subjects:
Acer catalpifolium
chloroplast genome
Chloroplasts
Endangered & extinct species
Endangered species
Genomes
Inverted repeat
Next-generation sequencing
Nucleotide sequence
phylogenetic analysis
Phylogeny
Rare species
rRNA
Sapindaceae
tRNA
Citations: Items that this one cites
Items that cite this one
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by cdi_FETCH-LOGICAL-c451t-11e66d66450f26e760721cff18e2c842de378d5d1913022c77413dc9e7e5bef03
cites cdi_FETCH-LOGICAL-c451t-11e66d66450f26e760721cff18e2c842de378d5d1913022c77413dc9e7e5bef03
container_end_page 2038
container_issue 1
container_start_page 2037
container_title Mitochondrial DNA. Part B. Resources
container_volume 4
creator Wang, Ao
He, Jian
Xu, Shenjian
Peng, Linlin
Zhao, Liangcheng
description Acer catalpifolium is a rare and endangered species in southwestern China. In this study, the complete chloroplast genome sequence of A. catalpifolium was characterized by de novo assembly using high-throughput sequencing. The length of the whole chloroplast genome was 156,225 bp, containing a large single copy region (LSC) of 85,976 bp and a small single copy region (SSC) of 18,066 bp, which were separated by a pair of 26,092 bp inverted repeat regions (IRs). The sequence contained 135 unique genes, including 40 tRNA, eight rRNA, and 87 protein-coding genes. The overall GC content of the chloroplast genome is 37.9% and those in the LSC, SSC, and IR regions are 36.1%, 32.2%, and 42.9%, respectively. The phylogenetic analysis based on reported chloroplast sequences of Sapindaceae showed that A. catalpifolium is sister to A. miaotaiense, and the genera of Acer and Dipteronia are closely related to Aesculus.
doi_str_mv 10.1080/23802359.2019.1618211
format article
fullrecord <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_crossref_primary_10_1080_23802359_2019_1618211</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><doaj_id>oai_doaj_org_article_fd5b8c9d8caa4211b13b2f862ce8b228</doaj_id><sourcerecordid>2352039357</sourcerecordid><originalsourceid>FETCH-LOGICAL-c451t-11e66d66450f26e760721cff18e2c842de378d5d1913022c77413dc9e7e5bef03</originalsourceid><addsrcrecordid>eNp9kcFq3DAQhk1poCHNIwQEvbTQ3Wok25JvDUvaBgI9JDmLsTTa1WJLruwl5O2rzaalp55m-DXzjWb-qroCvgau-RchNRey6daCQ7eGFrQAeFOdH_XV8eHtP_m76nKe95xzaKVSnTqv5ocdMZvGaaClJLsh5TQNOC9sSzGNxJJn15Yys7jgMAWfhnAY2cd7nEJ0aAnp02eGLGMmhtExKmrcUibHCicuLER2nw7L7okKdLMLEd9XZx6HmS5f40X1-O3mYfNjdffz--3m-m5l6waWFQC1rWvbuuFetKRargRY70GTsLoWjqTSrnHQgeRCWKVqkM52pKjpyXN5Ud2euC7h3kw5jJifTcJgXoSUtwbzEuxAxrum17Zz2iLW5YA9yF543QpLuhdCF9aHE2vK6dehrGL26ZBj-b4phxVcdrJRpao5Vdmc5jmT_zsVuDnaZf7YZY52mVe7St_XU1-IPuURn1IenFnwudjhM0YbZiP_j_gNALubEQ</addsrcrecordid><sourcetype>Open Website</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2352039357</pqid></control><display><type>article</type><title>The complete chloroplast genome of Acer catalpifolium (Sapindaceae), a rare and endangered plant in Southwest China</title><source>Taylor &amp; Francis Open Access</source><source>Publicly Available Content Database</source><source>PubMed Central</source><creator>Wang, Ao ; He, Jian ; Xu, Shenjian ; Peng, Linlin ; Zhao, Liangcheng</creator><creatorcontrib>Wang, Ao ; He, Jian ; Xu, Shenjian ; Peng, Linlin ; Zhao, Liangcheng</creatorcontrib><description>Acer catalpifolium is a rare and endangered species in southwestern China. In this study, the complete chloroplast genome sequence of A. catalpifolium was characterized by de novo assembly using high-throughput sequencing. The length of the whole chloroplast genome was 156,225 bp, containing a large single copy region (LSC) of 85,976 bp and a small single copy region (SSC) of 18,066 bp, which were separated by a pair of 26,092 bp inverted repeat regions (IRs). The sequence contained 135 unique genes, including 40 tRNA, eight rRNA, and 87 protein-coding genes. The overall GC content of the chloroplast genome is 37.9% and those in the LSC, SSC, and IR regions are 36.1%, 32.2%, and 42.9%, respectively. The phylogenetic analysis based on reported chloroplast sequences of Sapindaceae showed that A. catalpifolium is sister to A. miaotaiense, and the genera of Acer and Dipteronia are closely related to Aesculus.</description><identifier>ISSN: 2380-2359</identifier><identifier>EISSN: 2380-2359</identifier><identifier>DOI: 10.1080/23802359.2019.1618211</identifier><language>eng</language><publisher>Abingdon: Taylor &amp; Francis</publisher><subject>Acer catalpifolium ; chloroplast genome ; Chloroplasts ; Endangered &amp; extinct species ; Endangered species ; Genomes ; Inverted repeat ; Next-generation sequencing ; Nucleotide sequence ; phylogenetic analysis ; Phylogeny ; Rare species ; rRNA ; Sapindaceae ; tRNA</subject><ispartof>Mitochondrial DNA. Part B. Resources, 2019-01, Vol.4 (1), p.2037-2038</ispartof><rights>2019 The Author(s). Published by Informa UK Limited, trading as Taylor &amp; Francis Group. 2019</rights><rights>2019 The Author(s). Published by Informa UK Limited, trading as Taylor &amp; Francis Group. This work is licensed under the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c451t-11e66d66450f26e760721cff18e2c842de378d5d1913022c77413dc9e7e5bef03</citedby><cites>FETCH-LOGICAL-c451t-11e66d66450f26e760721cff18e2c842de378d5d1913022c77413dc9e7e5bef03</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.tandfonline.com/doi/pdf/10.1080/23802359.2019.1618211$$EPDF$$P50$$Ginformaworld$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/2352039357?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>314,780,784,25753,27502,27924,27925,37012,44590,59143,59144</link.rule.ids></links><search><creatorcontrib>Wang, Ao</creatorcontrib><creatorcontrib>He, Jian</creatorcontrib><creatorcontrib>Xu, Shenjian</creatorcontrib><creatorcontrib>Peng, Linlin</creatorcontrib><creatorcontrib>Zhao, Liangcheng</creatorcontrib><title>The complete chloroplast genome of Acer catalpifolium (Sapindaceae), a rare and endangered plant in Southwest China</title><title>Mitochondrial DNA. Part B. Resources</title><description>Acer catalpifolium is a rare and endangered species in southwestern China. In this study, the complete chloroplast genome sequence of A. catalpifolium was characterized by de novo assembly using high-throughput sequencing. The length of the whole chloroplast genome was 156,225 bp, containing a large single copy region (LSC) of 85,976 bp and a small single copy region (SSC) of 18,066 bp, which were separated by a pair of 26,092 bp inverted repeat regions (IRs). The sequence contained 135 unique genes, including 40 tRNA, eight rRNA, and 87 protein-coding genes. The overall GC content of the chloroplast genome is 37.9% and those in the LSC, SSC, and IR regions are 36.1%, 32.2%, and 42.9%, respectively. The phylogenetic analysis based on reported chloroplast sequences of Sapindaceae showed that A. catalpifolium is sister to A. miaotaiense, and the genera of Acer and Dipteronia are closely related to Aesculus.</description><subject>Acer catalpifolium</subject><subject>chloroplast genome</subject><subject>Chloroplasts</subject><subject>Endangered &amp; extinct species</subject><subject>Endangered species</subject><subject>Genomes</subject><subject>Inverted repeat</subject><subject>Next-generation sequencing</subject><subject>Nucleotide sequence</subject><subject>phylogenetic analysis</subject><subject>Phylogeny</subject><subject>Rare species</subject><subject>rRNA</subject><subject>Sapindaceae</subject><subject>tRNA</subject><issn>2380-2359</issn><issn>2380-2359</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>0YH</sourceid><sourceid>PIMPY</sourceid><sourceid>DOA</sourceid><recordid>eNp9kcFq3DAQhk1poCHNIwQEvbTQ3Wok25JvDUvaBgI9JDmLsTTa1WJLruwl5O2rzaalp55m-DXzjWb-qroCvgau-RchNRey6daCQ7eGFrQAeFOdH_XV8eHtP_m76nKe95xzaKVSnTqv5ocdMZvGaaClJLsh5TQNOC9sSzGNxJJn15Yys7jgMAWfhnAY2cd7nEJ0aAnp02eGLGMmhtExKmrcUibHCicuLER2nw7L7okKdLMLEd9XZx6HmS5f40X1-O3mYfNjdffz--3m-m5l6waWFQC1rWvbuuFetKRargRY70GTsLoWjqTSrnHQgeRCWKVqkM52pKjpyXN5Ud2euC7h3kw5jJifTcJgXoSUtwbzEuxAxrum17Zz2iLW5YA9yF543QpLuhdCF9aHE2vK6dehrGL26ZBj-b4phxVcdrJRpao5Vdmc5jmT_zsVuDnaZf7YZY52mVe7St_XU1-IPuURn1IenFnwudjhM0YbZiP_j_gNALubEQ</recordid><startdate>20190102</startdate><enddate>20190102</enddate><creator>Wang, Ao</creator><creator>He, Jian</creator><creator>Xu, Shenjian</creator><creator>Peng, Linlin</creator><creator>Zhao, Liangcheng</creator><general>Taylor &amp; Francis</general><general>Taylor &amp; Francis Ltd</general><general>Taylor &amp; Francis Group</general><scope>0YH</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7XB</scope><scope>8FD</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>M2O</scope><scope>MBDVC</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>RC3</scope><scope>DOA</scope></search><sort><creationdate>20190102</creationdate><title>The complete chloroplast genome of Acer catalpifolium (Sapindaceae), a rare and endangered plant in Southwest China</title><author>Wang, Ao ; He, Jian ; Xu, Shenjian ; Peng, Linlin ; Zhao, Liangcheng</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c451t-11e66d66450f26e760721cff18e2c842de378d5d1913022c77413dc9e7e5bef03</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>Acer catalpifolium</topic><topic>chloroplast genome</topic><topic>Chloroplasts</topic><topic>Endangered &amp; extinct species</topic><topic>Endangered species</topic><topic>Genomes</topic><topic>Inverted repeat</topic><topic>Next-generation sequencing</topic><topic>Nucleotide sequence</topic><topic>phylogenetic analysis</topic><topic>Phylogeny</topic><topic>Rare species</topic><topic>rRNA</topic><topic>Sapindaceae</topic><topic>tRNA</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Wang, Ao</creatorcontrib><creatorcontrib>He, Jian</creatorcontrib><creatorcontrib>Xu, Shenjian</creatorcontrib><creatorcontrib>Peng, Linlin</creatorcontrib><creatorcontrib>Zhao, Liangcheng</creatorcontrib><collection>Taylor &amp; Francis Open Access</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Technology Research Database</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>Research Library</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Mitochondrial DNA. Part B. Resources</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Wang, Ao</au><au>He, Jian</au><au>Xu, Shenjian</au><au>Peng, Linlin</au><au>Zhao, Liangcheng</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The complete chloroplast genome of Acer catalpifolium (Sapindaceae), a rare and endangered plant in Southwest China</atitle><jtitle>Mitochondrial DNA. Part B. Resources</jtitle><date>2019-01-02</date><risdate>2019</risdate><volume>4</volume><issue>1</issue><spage>2037</spage><epage>2038</epage><pages>2037-2038</pages><issn>2380-2359</issn><eissn>2380-2359</eissn><abstract>Acer catalpifolium is a rare and endangered species in southwestern China. In this study, the complete chloroplast genome sequence of A. catalpifolium was characterized by de novo assembly using high-throughput sequencing. The length of the whole chloroplast genome was 156,225 bp, containing a large single copy region (LSC) of 85,976 bp and a small single copy region (SSC) of 18,066 bp, which were separated by a pair of 26,092 bp inverted repeat regions (IRs). The sequence contained 135 unique genes, including 40 tRNA, eight rRNA, and 87 protein-coding genes. The overall GC content of the chloroplast genome is 37.9% and those in the LSC, SSC, and IR regions are 36.1%, 32.2%, and 42.9%, respectively. The phylogenetic analysis based on reported chloroplast sequences of Sapindaceae showed that A. catalpifolium is sister to A. miaotaiense, and the genera of Acer and Dipteronia are closely related to Aesculus.</abstract><cop>Abingdon</cop><pub>Taylor &amp; Francis</pub><doi>10.1080/23802359.2019.1618211</doi><tpages>2</tpages><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 2380-2359
ispartof Mitochondrial DNA. Part B. Resources, 2019-01, Vol.4 (1), p.2037-2038
issn 2380-2359
2380-2359
language eng
recordid cdi_crossref_primary_10_1080_23802359_2019_1618211
source Taylor & Francis Open Access; Publicly Available Content Database; PubMed Central
subjects Acer catalpifolium
chloroplast genome
Chloroplasts
Endangered & extinct species
Endangered species
Genomes
Inverted repeat
Next-generation sequencing
Nucleotide sequence
phylogenetic analysis
Phylogeny
Rare species
rRNA
Sapindaceae
tRNA
title The complete chloroplast genome of Acer catalpifolium (Sapindaceae), a rare and endangered plant in Southwest China
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-29T18%3A39%3A52IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=The%20complete%20chloroplast%20genome%20of%20Acer%20catalpifolium%20(Sapindaceae),%20a%20rare%20and%20endangered%20plant%20in%20Southwest%20China&rft.jtitle=Mitochondrial%20DNA.%20Part%20B.%20Resources&rft.au=Wang,%20Ao&rft.date=2019-01-02&rft.volume=4&rft.issue=1&rft.spage=2037&rft.epage=2038&rft.pages=2037-2038&rft.issn=2380-2359&rft.eissn=2380-2359&rft_id=info:doi/10.1080/23802359.2019.1618211&rft_dat=%3Cproquest_cross%3E2352039357%3C/proquest_cross%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c451t-11e66d66450f26e760721cff18e2c842de378d5d1913022c77413dc9e7e5bef03%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=2352039357&rft_id=info:pmid/&rfr_iscdi=true