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587. Research and Development of Image Recognition AI to Estimate Bacterial Species using Gram Stain Findings in Aerobic and Anaerobic Blood Culture Bottle

Abstract Background Background In the highly fatal infectious disease of bacteremia, the ability to select antimicrobial agents at an earlier time is critical not only for early patient recovery, but also for reducing the development of resistant organisms. Gram staining of blood cultures is a usefu...

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Published in:Open forum infectious diseases 2023-11, Vol.10 (Supplement_2)
Main Authors: Miyatsuka, Isao, Yamamoto, Kei, Ohji, Goh, Ohmagari, Norio, Kurokawa, Masami, Ebisawa, Kei Furui, Ohnuma, Kenichiro, Kusuki, Mari, Nakada, Mitsutaka, Maeta, Shogo
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creator Miyatsuka, Isao
Yamamoto, Kei
Ohji, Goh
Ohmagari, Norio
Kurokawa, Masami
Ebisawa, Kei Furui
Ohnuma, Kenichiro
Kusuki, Mari
Nakada, Mitsutaka
Maeta, Shogo
description Abstract Background Background In the highly fatal infectious disease of bacteremia, the ability to select antimicrobial agents at an earlier time is critical not only for early patient recovery, but also for reducing the development of resistant organisms. Gram staining of blood cultures is a useful test for early selection of antimicrobial agents, but it requires some skill in deciphering. Therefore, we developed an image analysis system for Gram stain images of blood cultures and have verified whether it is possible to estimate the bacterial species to facilitate the initial selection of antimicrobial agents, regardless of the level of proficiency. Methods Method Slides and bacterial species-identification information from an anonymized Gram stain registry at two medical institutions, National Center for Global health and Medicine (NCGM) and Kobe University Hospital (KUH), were used for the study. 1113 cases of aerobic bottles and 1060 cases of anaerobic bottles were included. Mock-specimens were used for the rare bacteria. A total of 23,947 images were generated by capturing the observation field of view of an optical microscope with a smartphone. Table 1 shows the bacterial classification of aerobic bottles and Table 2 shows the bacterial classification of anaerobic bottles. The data were divided into training data and test data at a ratio of 8 to 2 for each category.Table 1.A total of 16 categories of bacteria were used for classification of aerobic bottlesTable 2.A total of 16 categories of bacteria were used for classification of anaerobic bottles Results The macro-average recall (sensitivity) and accuracy of the test data were 64% and 82% for aerobic bottles and 68% and 86% for anaerobic bottles, respectively. The results showed the possibility of classifying the performing bacterial species with an accuracy of over 70% using only Gram stained images via image recognition AI. For aerobic bottles in particular, the seven categories of GNR, GNC, GPR, GPC, yeast, No organism, and multiple bacteria are predicted to have 97% accuracy, and 90% macro average recall. Conclusion The research has shown that it is possible to classify bacterial species to a certain extent only by observing the Gram stain images. Our goal is to narrow down and focus more on the clinically-meaningful bacterial species, and to improve the accuracy of our classification. Also, we are planning to make comparisons with specialists in the future. Disclosures Kei Yamamoto, MD, Canon
doi_str_mv 10.1093/ofid/ofad500.656
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Research and Development of Image Recognition AI to Estimate Bacterial Species using Gram Stain Findings in Aerobic and Anaerobic Blood Culture Bottle</title><source>PubMed (Medline)</source><source>Oxford Journals Open Access Collection</source><creator>Miyatsuka, Isao ; Yamamoto, Kei ; Ohji, Goh ; Ohmagari, Norio ; Kurokawa, Masami ; Ebisawa, Kei Furui ; Ohnuma, Kenichiro ; Kusuki, Mari ; Nakada, Mitsutaka ; Maeta, Shogo</creator><creatorcontrib>Miyatsuka, Isao ; Yamamoto, Kei ; Ohji, Goh ; Ohmagari, Norio ; Kurokawa, Masami ; Ebisawa, Kei Furui ; Ohnuma, Kenichiro ; Kusuki, Mari ; Nakada, Mitsutaka ; Maeta, Shogo</creatorcontrib><description>Abstract Background Background In the highly fatal infectious disease of bacteremia, the ability to select antimicrobial agents at an earlier time is critical not only for early patient recovery, but also for reducing the development of resistant organisms. Gram staining of blood cultures is a useful test for early selection of antimicrobial agents, but it requires some skill in deciphering. Therefore, we developed an image analysis system for Gram stain images of blood cultures and have verified whether it is possible to estimate the bacterial species to facilitate the initial selection of antimicrobial agents, regardless of the level of proficiency. Methods Method Slides and bacterial species-identification information from an anonymized Gram stain registry at two medical institutions, National Center for Global health and Medicine (NCGM) and Kobe University Hospital (KUH), were used for the study. 1113 cases of aerobic bottles and 1060 cases of anaerobic bottles were included. Mock-specimens were used for the rare bacteria. A total of 23,947 images were generated by capturing the observation field of view of an optical microscope with a smartphone. Table 1 shows the bacterial classification of aerobic bottles and Table 2 shows the bacterial classification of anaerobic bottles. The data were divided into training data and test data at a ratio of 8 to 2 for each category.Table 1.A total of 16 categories of bacteria were used for classification of aerobic bottlesTable 2.A total of 16 categories of bacteria were used for classification of anaerobic bottles Results The macro-average recall (sensitivity) and accuracy of the test data were 64% and 82% for aerobic bottles and 68% and 86% for anaerobic bottles, respectively. The results showed the possibility of classifying the performing bacterial species with an accuracy of over 70% using only Gram stained images via image recognition AI. For aerobic bottles in particular, the seven categories of GNR, GNC, GPR, GPC, yeast, No organism, and multiple bacteria are predicted to have 97% accuracy, and 90% macro average recall. Conclusion The research has shown that it is possible to classify bacterial species to a certain extent only by observing the Gram stain images. Our goal is to narrow down and focus more on the clinically-meaningful bacterial species, and to improve the accuracy of our classification. Also, we are planning to make comparisons with specialists in the future. Disclosures Kei Yamamoto, MD, Canon medical systems: Grant/Research Support|CarbGeM: Grant/Research Support|CarbGeM: 7090302|Fujirebio: Grant/Research Support|Sanyo Chemical Industries: Grant/Research Support|VisGene: Grant/Research Support Goh Ohji, MD, PhD, DTMH, CarbGeM: Advisor/Consultant</description><identifier>ISSN: 2328-8957</identifier><identifier>EISSN: 2328-8957</identifier><identifier>DOI: 10.1093/ofid/ofad500.656</identifier><language>eng</language><publisher>US: Oxford University Press</publisher><ispartof>Open forum infectious diseases, 2023-11, Vol.10 (Supplement_2)</ispartof><rights>The Author(s) 2023. 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Research and Development of Image Recognition AI to Estimate Bacterial Species using Gram Stain Findings in Aerobic and Anaerobic Blood Culture Bottle</title><title>Open forum infectious diseases</title><description>Abstract Background Background In the highly fatal infectious disease of bacteremia, the ability to select antimicrobial agents at an earlier time is critical not only for early patient recovery, but also for reducing the development of resistant organisms. Gram staining of blood cultures is a useful test for early selection of antimicrobial agents, but it requires some skill in deciphering. Therefore, we developed an image analysis system for Gram stain images of blood cultures and have verified whether it is possible to estimate the bacterial species to facilitate the initial selection of antimicrobial agents, regardless of the level of proficiency. Methods Method Slides and bacterial species-identification information from an anonymized Gram stain registry at two medical institutions, National Center for Global health and Medicine (NCGM) and Kobe University Hospital (KUH), were used for the study. 1113 cases of aerobic bottles and 1060 cases of anaerobic bottles were included. Mock-specimens were used for the rare bacteria. A total of 23,947 images were generated by capturing the observation field of view of an optical microscope with a smartphone. Table 1 shows the bacterial classification of aerobic bottles and Table 2 shows the bacterial classification of anaerobic bottles. The data were divided into training data and test data at a ratio of 8 to 2 for each category.Table 1.A total of 16 categories of bacteria were used for classification of aerobic bottlesTable 2.A total of 16 categories of bacteria were used for classification of anaerobic bottles Results The macro-average recall (sensitivity) and accuracy of the test data were 64% and 82% for aerobic bottles and 68% and 86% for anaerobic bottles, respectively. The results showed the possibility of classifying the performing bacterial species with an accuracy of over 70% using only Gram stained images via image recognition AI. For aerobic bottles in particular, the seven categories of GNR, GNC, GPR, GPC, yeast, No organism, and multiple bacteria are predicted to have 97% accuracy, and 90% macro average recall. Conclusion The research has shown that it is possible to classify bacterial species to a certain extent only by observing the Gram stain images. Our goal is to narrow down and focus more on the clinically-meaningful bacterial species, and to improve the accuracy of our classification. Also, we are planning to make comparisons with specialists in the future. 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Research and Development of Image Recognition AI to Estimate Bacterial Species using Gram Stain Findings in Aerobic and Anaerobic Blood Culture Bottle</title><author>Miyatsuka, Isao ; Yamamoto, Kei ; Ohji, Goh ; Ohmagari, Norio ; Kurokawa, Masami ; Ebisawa, Kei Furui ; Ohnuma, Kenichiro ; Kusuki, Mari ; Nakada, Mitsutaka ; Maeta, Shogo</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c1196-2181d1af6b6507877435fb2cc6c5fb78ea6cfe4be683abd9073cab3055b0f7753</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Miyatsuka, Isao</creatorcontrib><creatorcontrib>Yamamoto, Kei</creatorcontrib><creatorcontrib>Ohji, Goh</creatorcontrib><creatorcontrib>Ohmagari, Norio</creatorcontrib><creatorcontrib>Kurokawa, Masami</creatorcontrib><creatorcontrib>Ebisawa, Kei Furui</creatorcontrib><creatorcontrib>Ohnuma, Kenichiro</creatorcontrib><creatorcontrib>Kusuki, Mari</creatorcontrib><creatorcontrib>Nakada, Mitsutaka</creatorcontrib><creatorcontrib>Maeta, Shogo</creatorcontrib><collection>Oxford Journals Open Access Collection</collection><collection>CrossRef</collection><jtitle>Open forum infectious diseases</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Miyatsuka, Isao</au><au>Yamamoto, Kei</au><au>Ohji, Goh</au><au>Ohmagari, Norio</au><au>Kurokawa, Masami</au><au>Ebisawa, Kei Furui</au><au>Ohnuma, Kenichiro</au><au>Kusuki, Mari</au><au>Nakada, Mitsutaka</au><au>Maeta, Shogo</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>587. Research and Development of Image Recognition AI to Estimate Bacterial Species using Gram Stain Findings in Aerobic and Anaerobic Blood Culture Bottle</atitle><jtitle>Open forum infectious diseases</jtitle><date>2023-11-27</date><risdate>2023</risdate><volume>10</volume><issue>Supplement_2</issue><issn>2328-8957</issn><eissn>2328-8957</eissn><abstract>Abstract Background Background In the highly fatal infectious disease of bacteremia, the ability to select antimicrobial agents at an earlier time is critical not only for early patient recovery, but also for reducing the development of resistant organisms. Gram staining of blood cultures is a useful test for early selection of antimicrobial agents, but it requires some skill in deciphering. Therefore, we developed an image analysis system for Gram stain images of blood cultures and have verified whether it is possible to estimate the bacterial species to facilitate the initial selection of antimicrobial agents, regardless of the level of proficiency. Methods Method Slides and bacterial species-identification information from an anonymized Gram stain registry at two medical institutions, National Center for Global health and Medicine (NCGM) and Kobe University Hospital (KUH), were used for the study. 1113 cases of aerobic bottles and 1060 cases of anaerobic bottles were included. Mock-specimens were used for the rare bacteria. A total of 23,947 images were generated by capturing the observation field of view of an optical microscope with a smartphone. Table 1 shows the bacterial classification of aerobic bottles and Table 2 shows the bacterial classification of anaerobic bottles. The data were divided into training data and test data at a ratio of 8 to 2 for each category.Table 1.A total of 16 categories of bacteria were used for classification of aerobic bottlesTable 2.A total of 16 categories of bacteria were used for classification of anaerobic bottles Results The macro-average recall (sensitivity) and accuracy of the test data were 64% and 82% for aerobic bottles and 68% and 86% for anaerobic bottles, respectively. The results showed the possibility of classifying the performing bacterial species with an accuracy of over 70% using only Gram stained images via image recognition AI. For aerobic bottles in particular, the seven categories of GNR, GNC, GPR, GPC, yeast, No organism, and multiple bacteria are predicted to have 97% accuracy, and 90% macro average recall. Conclusion The research has shown that it is possible to classify bacterial species to a certain extent only by observing the Gram stain images. Our goal is to narrow down and focus more on the clinically-meaningful bacterial species, and to improve the accuracy of our classification. Also, we are planning to make comparisons with specialists in the future. Disclosures Kei Yamamoto, MD, Canon medical systems: Grant/Research Support|CarbGeM: Grant/Research Support|CarbGeM: 7090302|Fujirebio: Grant/Research Support|Sanyo Chemical Industries: Grant/Research Support|VisGene: Grant/Research Support Goh Ohji, MD, PhD, DTMH, CarbGeM: Advisor/Consultant</abstract><cop>US</cop><pub>Oxford University Press</pub><doi>10.1093/ofid/ofad500.656</doi><oa>free_for_read</oa></addata></record>
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title 587. Research and Development of Image Recognition AI to Estimate Bacterial Species using Gram Stain Findings in Aerobic and Anaerobic Blood Culture Bottle
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