A Survey of Biological Building Blocks for Synthetic Molecular Communication Systems

• Published in: IEEE Communications surveys and tutorials 2020-01, Vol.22 (4), p.2765-2800
• Main Authors: Soldner, Christian A., Socher, Eileen, Jamali, Vahid, Wicke, Wayan, Ahmadzadeh, Arman, Breitinger, Hans-Georg, Burkovski, Andreas, Castiglione, Kathrin, Schober, Robert, Sticht, Heinrich
• Format: Article
• Language: English
• Subjects: Biological information theory; Biological properties; Calcium ions; Communication; Communications systems; Dopamine; Drug delivery systems; Molecular communications; Nanobioscience; Neurotransmitters; Proteins; Receivers; Serotonin; Signaling; signaling particles; Synthetic biology; test-bed implementation; transmitter and receiver architecture; Transmitters; Tutorials
• ISSN: 1553-877X; 1553-877X; 2373-745X
• DOI: 10.1109/COMST.2020.3008819

Synthetic molecular communication (MC) is a new communication engineering paradigm which is expected to enable revolutionary applications such as smart drug delivery and real-time health monitoring. The design and implementation of synthetic MC systems (MCSs) at nano- and microscale is very challenging. This is particularly true for synthetic MCSs employing biological components as transmitters and receivers or as interfaces with natural biological MCSs. Nevertheless, since such biological components have been optimized by nature over billions of years, using them in synthetic MCSs is highly promising. This paper provides a survey of biological components that can potentially serve as the main building blocks, i.e., transmitter, receiver, and signaling particles, for the design and implementation of synthetic MCSs. Nature uses a large variety of signaling particles of different sizes and with vastly different properties for communication among biological entities. Here, we focus on three important classes of signaling particles: cations (specifically protons and calcium ions), neurotransmitters (specifically acetylcholine, dopamine, and serotonin), and phosphopeptides. These three classes have unique and distinct features such as their large diffusion coefficients, their specificity, and/or their uniqueness of signaling that make them suitable candidates for signaling particles in synthetic MCSs. For each of these candidate signaling particles, we present several specific transmitter and receiver structures mainly built upon proteins that are capable of performing the distinct physiological functionalities required from the transmitters and receivers of MCSs. Moreover, we present options for both microscale implementation of MCSs as well as the micro-to-macroscale interfaces needed for experimental evaluation of MCSs. One of the main advantages of employing proteins for signal emission and detection is that they can be modified with tools from synthetic biology and be tailored to a wide range of application needs. We discuss the properties, limitations, and applications of the proposed biological building blocks for synthetic MCSs in detail. Furthermore, we outline new research directions for the implementation and the theoretical design and analysis of the proposed transmitter and receiver architectures.