Loading…

Genome wide identification of mungbean (Vigna radiata [L.] R. Wilczek) Late Embryogenesis Abundant (LEA) protein gene family

Abstract Mungbean (Vigna radiata L. Wilczek) an important legume crop with valuable nutritional and health benefits is severely affected by drought conditions. Desiccation tolerance is a capacity of seeds to survive and maintain physiological activities during storage and stress conditions. LEA prot...

Full description

Saved in:
Bibliographic Details
Published in:Israel journal of plant sciences 2022-02, Vol.69 (1-2), p.79-86
Main Authors: Likhith, Rampura K, Alagarasan, Ganesh, Muthurajan, Raveendran, Parasuraman, Boominathan, Subramanian, Rajesh
Format: Article
Language:English
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by
cites
container_end_page 86
container_issue 1-2
container_start_page 79
container_title Israel journal of plant sciences
container_volume 69
creator Likhith, Rampura K
Alagarasan, Ganesh
Muthurajan, Raveendran
Parasuraman, Boominathan
Subramanian, Rajesh
description Abstract Mungbean (Vigna radiata L. Wilczek) an important legume crop with valuable nutritional and health benefits is severely affected by drought conditions. Desiccation tolerance is a capacity of seeds to survive and maintain physiological activities during storage and stress conditions. LEA proteins are group of stress associated proteins that help the plants survive water deficit stress. Here we have performed genome-wide analysis of mungbean LEA (VrLEA) genes, and also insilico physical/functional characterization. Gene-positioning showed that 307 VrLEAs are present in all the eleven chromosomes, but are unevenly distributed. Upstream promoter sequence analysis of LEA genes revealed the occurrence of MYB transcription factor (TF)in higher number compared to other TFs i.e., bZIP, AP2, WRKY, NAC and bHLH.Further, we downstreamed our analysis to fewer VrLEAs, based on drought responsive data. The VrLEAs obtained from the earlier experimental data were examined for its organelle localization and found that they are intracellular functional proteins.
doi_str_mv 10.1163/22238980-bja10049
format article
fullrecord <record><control><sourceid>brill_cross</sourceid><recordid>TN_cdi_crossref_primary_10_1163_22238980_bja10049</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>10_1163_22238980_bja10049</sourcerecordid><originalsourceid>FETCH-LOGICAL-b237t-617f7db8be0a5b0714dce28118be383a6a52e975f9d2c383b3a913109a7d44303</originalsourceid><addsrcrecordid>eNp9kE1Lw0AQhhdRsFZ_gLc5toe0-5F2s8dSahUCgvhxEAmzyaZsTTZls0Uq_ngTaq8ehoHn5RmGl5BbRieMzcWUcy4SldBIb5FRGqszMuhZ1MNzMqBS8UgpmVySq7bdUsoZE3xAftbGNbWBL1sY6MYFW9ocg20cNCXUe7fRBh2MXu3GIXgsLAaE93TyAU8TeLNV_m0-x5BiMLCqtT80G-NMa1tY6L0r0AUYpavFGHa-CcY66GMosbbV4ZpclFi15uZvD8nL3ep5eR-lj-uH5SKNNBcyRHMmS1noRBuKM00li4vc8ISxjohE4Bxn3Cg5K1XB8w5ogYoJRhXKIo4FFUPCjndz37StN2W287ZGf8gYzfr6slN92am-zpkeHe1tVWXbZu9d9-M_xi-qf3F1</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype></control><display><type>article</type><title>Genome wide identification of mungbean (Vigna radiata [L.] R. Wilczek) Late Embryogenesis Abundant (LEA) protein gene family</title><source>Alma/SFX Local Collection</source><creator>Likhith, Rampura K ; Alagarasan, Ganesh ; Muthurajan, Raveendran ; Parasuraman, Boominathan ; Subramanian, Rajesh</creator><creatorcontrib>Likhith, Rampura K ; Alagarasan, Ganesh ; Muthurajan, Raveendran ; Parasuraman, Boominathan ; Subramanian, Rajesh</creatorcontrib><description>Abstract Mungbean (Vigna radiata L. Wilczek) an important legume crop with valuable nutritional and health benefits is severely affected by drought conditions. Desiccation tolerance is a capacity of seeds to survive and maintain physiological activities during storage and stress conditions. LEA proteins are group of stress associated proteins that help the plants survive water deficit stress. Here we have performed genome-wide analysis of mungbean LEA (VrLEA) genes, and also insilico physical/functional characterization. Gene-positioning showed that 307 VrLEAs are present in all the eleven chromosomes, but are unevenly distributed. Upstream promoter sequence analysis of LEA genes revealed the occurrence of MYB transcription factor (TF)in higher number compared to other TFs i.e., bZIP, AP2, WRKY, NAC and bHLH.Further, we downstreamed our analysis to fewer VrLEAs, based on drought responsive data. The VrLEAs obtained from the earlier experimental data were examined for its organelle localization and found that they are intracellular functional proteins.</description><identifier>ISSN: 0792-9978</identifier><identifier>EISSN: 2223-8980</identifier><identifier>DOI: 10.1163/22238980-bja10049</identifier><language>eng</language><publisher>Leiden: Brill</publisher><ispartof>Israel journal of plant sciences, 2022-02, Vol.69 (1-2), p.79-86</ispartof><rights>Koninklijke Brill NV, Leiden, 2021</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail></links><search><creatorcontrib>Likhith, Rampura K</creatorcontrib><creatorcontrib>Alagarasan, Ganesh</creatorcontrib><creatorcontrib>Muthurajan, Raveendran</creatorcontrib><creatorcontrib>Parasuraman, Boominathan</creatorcontrib><creatorcontrib>Subramanian, Rajesh</creatorcontrib><title>Genome wide identification of mungbean (Vigna radiata [L.] R. Wilczek) Late Embryogenesis Abundant (LEA) protein gene family</title><title>Israel journal of plant sciences</title><description>Abstract Mungbean (Vigna radiata L. Wilczek) an important legume crop with valuable nutritional and health benefits is severely affected by drought conditions. Desiccation tolerance is a capacity of seeds to survive and maintain physiological activities during storage and stress conditions. LEA proteins are group of stress associated proteins that help the plants survive water deficit stress. Here we have performed genome-wide analysis of mungbean LEA (VrLEA) genes, and also insilico physical/functional characterization. Gene-positioning showed that 307 VrLEAs are present in all the eleven chromosomes, but are unevenly distributed. Upstream promoter sequence analysis of LEA genes revealed the occurrence of MYB transcription factor (TF)in higher number compared to other TFs i.e., bZIP, AP2, WRKY, NAC and bHLH.Further, we downstreamed our analysis to fewer VrLEAs, based on drought responsive data. The VrLEAs obtained from the earlier experimental data were examined for its organelle localization and found that they are intracellular functional proteins.</description><issn>0792-9978</issn><issn>2223-8980</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><recordid>eNp9kE1Lw0AQhhdRsFZ_gLc5toe0-5F2s8dSahUCgvhxEAmzyaZsTTZls0Uq_ngTaq8ehoHn5RmGl5BbRieMzcWUcy4SldBIb5FRGqszMuhZ1MNzMqBS8UgpmVySq7bdUsoZE3xAftbGNbWBL1sY6MYFW9ocg20cNCXUe7fRBh2MXu3GIXgsLAaE93TyAU8TeLNV_m0-x5BiMLCqtT80G-NMa1tY6L0r0AUYpavFGHa-CcY66GMosbbV4ZpclFi15uZvD8nL3ep5eR-lj-uH5SKNNBcyRHMmS1noRBuKM00li4vc8ISxjohE4Bxn3Cg5K1XB8w5ogYoJRhXKIo4FFUPCjndz37StN2W287ZGf8gYzfr6slN92am-zpkeHe1tVWXbZu9d9-M_xi-qf3F1</recordid><startdate>20220201</startdate><enddate>20220201</enddate><creator>Likhith, Rampura K</creator><creator>Alagarasan, Ganesh</creator><creator>Muthurajan, Raveendran</creator><creator>Parasuraman, Boominathan</creator><creator>Subramanian, Rajesh</creator><general>Brill</general><scope>AAYXX</scope><scope>CITATION</scope></search><sort><creationdate>20220201</creationdate><title>Genome wide identification of mungbean (Vigna radiata [L.] R. Wilczek) Late Embryogenesis Abundant (LEA) protein gene family</title><author>Likhith, Rampura K ; Alagarasan, Ganesh ; Muthurajan, Raveendran ; Parasuraman, Boominathan ; Subramanian, Rajesh</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-b237t-617f7db8be0a5b0714dce28118be383a6a52e975f9d2c383b3a913109a7d44303</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Likhith, Rampura K</creatorcontrib><creatorcontrib>Alagarasan, Ganesh</creatorcontrib><creatorcontrib>Muthurajan, Raveendran</creatorcontrib><creatorcontrib>Parasuraman, Boominathan</creatorcontrib><creatorcontrib>Subramanian, Rajesh</creatorcontrib><collection>CrossRef</collection><jtitle>Israel journal of plant sciences</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Likhith, Rampura K</au><au>Alagarasan, Ganesh</au><au>Muthurajan, Raveendran</au><au>Parasuraman, Boominathan</au><au>Subramanian, Rajesh</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genome wide identification of mungbean (Vigna radiata [L.] R. Wilczek) Late Embryogenesis Abundant (LEA) protein gene family</atitle><jtitle>Israel journal of plant sciences</jtitle><date>2022-02-01</date><risdate>2022</risdate><volume>69</volume><issue>1-2</issue><spage>79</spage><epage>86</epage><pages>79-86</pages><issn>0792-9978</issn><eissn>2223-8980</eissn><abstract>Abstract Mungbean (Vigna radiata L. Wilczek) an important legume crop with valuable nutritional and health benefits is severely affected by drought conditions. Desiccation tolerance is a capacity of seeds to survive and maintain physiological activities during storage and stress conditions. LEA proteins are group of stress associated proteins that help the plants survive water deficit stress. Here we have performed genome-wide analysis of mungbean LEA (VrLEA) genes, and also insilico physical/functional characterization. Gene-positioning showed that 307 VrLEAs are present in all the eleven chromosomes, but are unevenly distributed. Upstream promoter sequence analysis of LEA genes revealed the occurrence of MYB transcription factor (TF)in higher number compared to other TFs i.e., bZIP, AP2, WRKY, NAC and bHLH.Further, we downstreamed our analysis to fewer VrLEAs, based on drought responsive data. The VrLEAs obtained from the earlier experimental data were examined for its organelle localization and found that they are intracellular functional proteins.</abstract><cop>Leiden</cop><pub>Brill</pub><doi>10.1163/22238980-bja10049</doi><tpages>8</tpages></addata></record>
fulltext fulltext
identifier ISSN: 0792-9978
ispartof Israel journal of plant sciences, 2022-02, Vol.69 (1-2), p.79-86
issn 0792-9978
2223-8980
language eng
recordid cdi_crossref_primary_10_1163_22238980_bja10049
source Alma/SFX Local Collection
title Genome wide identification of mungbean (Vigna radiata [L.] R. Wilczek) Late Embryogenesis Abundant (LEA) protein gene family
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-03-10T00%3A19%3A17IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-brill_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Genome%20wide%20identification%20of%20mungbean%20(Vigna%20radiata%20%5BL.%5D%20R.%20Wilczek)%20Late%20Embryogenesis%20Abundant%20(LEA)%20protein%20gene%20family&rft.jtitle=Israel%20journal%20of%20plant%20sciences&rft.au=Likhith,%20Rampura%20K&rft.date=2022-02-01&rft.volume=69&rft.issue=1-2&rft.spage=79&rft.epage=86&rft.pages=79-86&rft.issn=0792-9978&rft.eissn=2223-8980&rft_id=info:doi/10.1163/22238980-bja10049&rft_dat=%3Cbrill_cross%3E10_1163_22238980_bja10049%3C/brill_cross%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-b237t-617f7db8be0a5b0714dce28118be383a6a52e975f9d2c383b3a913109a7d44303%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_id=info:pmid/&rfr_iscdi=true