The statistical characteristics of protein hydration shells: A computer simulation

Water molecules and the hydrogen-bond network are essential structural components of many biological macromolecular systems, such as nucleic acids, as well as fibrillar and globular proteins. The water density in the protein hydration shell is known to differ from that of bulk water. In this paper,...

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Bibliographic Details
Published in:Moscow University physics bulletin 2015-09, Vol.70 (5), p.362-367
Main Authors: Rubtcova, E. V., Solovey, A. B., Lobyshev, V. I.
Format: Article
Language:English
Subjects:
Mathematical and Computational Physics
Physics
Physics and Astronomy
Theoretical
Theoretical and Mathematical Physics
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Summary:Water molecules and the hydrogen-bond network are essential structural components of many biological macromolecular systems, such as nucleic acids, as well as fibrillar and globular proteins. The water density in the protein hydration shell is known to differ from that of bulk water. In this paper, spatial density as function of the distance from the protein surface is discussed. The electric potential function is considered in the same way. The resulting profiles of the bound water density are characterized by the presence of several distinct maxima due to the existence of the regular structure of bound water at distances over 7 Å. The minor discrepancies that are observed in both radial functions for different proteins are explained by topological variations that were revealed earlier by studying the valence and dihedral angle-distribution functions for water bound to the same proteins.
ISSN:0027-1349
1934-8460
DOI:10.3103/S0027134915050136