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Data on the diets of Salish Sea harbour seals from DNA metabarcoding
Marine trophic ecology data are in high demand as natural resource agencies increasingly adopt ecosystem-based management strategies that account for complex species interactions. Harbour seal ( Phoca vitulina ) diet data are of particular interest because the species is an abundant predator in the...
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| Published in: | Scientific data 2022-03, Vol.9 (1), p.68-68, Article 68 |
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| creator | Thomas, Austen C. Deagle, Bruce Nordstrom, Chad Majewski, Sheena Nelson, Benjamin W. Acevedo-Gutiérrez, Alejandro Jeffries, Steven Moore, Jed Louden, Amelia Allegue, Hassen Pearson, Scott Schmidt, Michael Trites, Andrew W. |
| description | Marine trophic ecology data are in high demand as natural resource agencies increasingly adopt ecosystem-based management strategies that account for complex species interactions. Harbour seal (
Phoca vitulina
) diet data are of particular interest because the species is an abundant predator in the northeast Pacific Ocean and Salish Sea ecosystem that consumes Pacific salmon (
Oncorhynchus spp
.). A multi-agency effort was therefore undertaken to produce harbour seal diet data on an ecosystem scale using, 1) a standardized set of scat collection and analysis methods, and 2) a newly developed DNA metabarcoding diet analysis technique designed to identify prey species and quantify their relative proportions in seal diets. The DNA-based dataset described herein contains records from 4,625 harbour seal scats representing 52 haulout sites, 7 years, 12 calendar months, and a total of 11,641 prey identifications. Prey morphological hard parts analyses were conducted alongside, resulting in corresponding hard parts data for 92% of the scat DNA samples. A custom-built prey DNA sequence database containing 201 species (192 fishes, 9 cephalopods) is also provided.
Measurement(s)
diet
Technology Type(s)
DNA metabarcoding diet analysis
Sample Characteristic - Organism
Phoca vitulina
Machine-accessible metadata file describing the reported data:
https://doi.org/10.6084/m9.figshare.19077809 |
| doi_str_mv | 10.1038/s41597-022-01152-5 |
| format | article |
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Phoca vitulina
) diet data are of particular interest because the species is an abundant predator in the northeast Pacific Ocean and Salish Sea ecosystem that consumes Pacific salmon (
Oncorhynchus spp
.). A multi-agency effort was therefore undertaken to produce harbour seal diet data on an ecosystem scale using, 1) a standardized set of scat collection and analysis methods, and 2) a newly developed DNA metabarcoding diet analysis technique designed to identify prey species and quantify their relative proportions in seal diets. The DNA-based dataset described herein contains records from 4,625 harbour seal scats representing 52 haulout sites, 7 years, 12 calendar months, and a total of 11,641 prey identifications. Prey morphological hard parts analyses were conducted alongside, resulting in corresponding hard parts data for 92% of the scat DNA samples. A custom-built prey DNA sequence database containing 201 species (192 fishes, 9 cephalopods) is also provided.
Measurement(s)
diet
Technology Type(s)
DNA metabarcoding diet analysis
Sample Characteristic - Organism
Phoca vitulina
Machine-accessible metadata file describing the reported data:
https://doi.org/10.6084/m9.figshare.19077809</description><identifier>ISSN: 2052-4463</identifier><identifier>EISSN: 2052-4463</identifier><identifier>DOI: 10.1038/s41597-022-01152-5</identifier><identifier>PMID: 35236843</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>631/601/18 ; 704/158/1144 ; 704/158/2452 ; 704/829/826 ; Animals ; Data Descriptor ; Deoxyribonucleic acid ; Diet ; DNA ; DNA Barcoding, Taxonomic ; Ecosystem ; Ecosystem management ; Ecosystems ; Genetic testing ; Humanities and Social Sciences ; multidisciplinary ; Nucleotide sequence ; Phoca ; Phoca vitulina ; Prey ; Science ; Science (multidisciplinary) ; Species</subject><ispartof>Scientific data, 2022-03, Vol.9 (1), p.68-68, Article 68</ispartof><rights>The Author(s) 2022</rights><rights>2022. The Author(s).</rights><rights>The Author(s) 2022. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c540t-ab0b051e02cfd5016e394bbc3c8b9a5000e02c14ed37319aab8ab695486598503</citedby><cites>FETCH-LOGICAL-c540t-ab0b051e02cfd5016e394bbc3c8b9a5000e02c14ed37319aab8ab695486598503</cites><orcidid>0000-0002-6182-9440 ; 0000-0001-9357-9151</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/2635112391/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/2635112391?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,25752,27923,27924,37011,37012,44589,53790,53792,74897</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35236843$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Thomas, Austen C.</creatorcontrib><creatorcontrib>Deagle, Bruce</creatorcontrib><creatorcontrib>Nordstrom, Chad</creatorcontrib><creatorcontrib>Majewski, Sheena</creatorcontrib><creatorcontrib>Nelson, Benjamin W.</creatorcontrib><creatorcontrib>Acevedo-Gutiérrez, Alejandro</creatorcontrib><creatorcontrib>Jeffries, Steven</creatorcontrib><creatorcontrib>Moore, Jed</creatorcontrib><creatorcontrib>Louden, Amelia</creatorcontrib><creatorcontrib>Allegue, Hassen</creatorcontrib><creatorcontrib>Pearson, Scott</creatorcontrib><creatorcontrib>Schmidt, Michael</creatorcontrib><creatorcontrib>Trites, Andrew W.</creatorcontrib><title>Data on the diets of Salish Sea harbour seals from DNA metabarcoding</title><title>Scientific data</title><addtitle>Sci Data</addtitle><addtitle>Sci Data</addtitle><description>Marine trophic ecology data are in high demand as natural resource agencies increasingly adopt ecosystem-based management strategies that account for complex species interactions. Harbour seal (
Phoca vitulina
) diet data are of particular interest because the species is an abundant predator in the northeast Pacific Ocean and Salish Sea ecosystem that consumes Pacific salmon (
Oncorhynchus spp
.). A multi-agency effort was therefore undertaken to produce harbour seal diet data on an ecosystem scale using, 1) a standardized set of scat collection and analysis methods, and 2) a newly developed DNA metabarcoding diet analysis technique designed to identify prey species and quantify their relative proportions in seal diets. The DNA-based dataset described herein contains records from 4,625 harbour seal scats representing 52 haulout sites, 7 years, 12 calendar months, and a total of 11,641 prey identifications. Prey morphological hard parts analyses were conducted alongside, resulting in corresponding hard parts data for 92% of the scat DNA samples. A custom-built prey DNA sequence database containing 201 species (192 fishes, 9 cephalopods) is also provided.
Measurement(s)
diet
Technology Type(s)
DNA metabarcoding diet analysis
Sample Characteristic - Organism
Phoca vitulina
Machine-accessible metadata file describing the reported data:
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Data</addtitle><date>2022-03-02</date><risdate>2022</risdate><volume>9</volume><issue>1</issue><spage>68</spage><epage>68</epage><pages>68-68</pages><artnum>68</artnum><issn>2052-4463</issn><eissn>2052-4463</eissn><abstract>Marine trophic ecology data are in high demand as natural resource agencies increasingly adopt ecosystem-based management strategies that account for complex species interactions. Harbour seal (
Phoca vitulina
) diet data are of particular interest because the species is an abundant predator in the northeast Pacific Ocean and Salish Sea ecosystem that consumes Pacific salmon (
Oncorhynchus spp
.). A multi-agency effort was therefore undertaken to produce harbour seal diet data on an ecosystem scale using, 1) a standardized set of scat collection and analysis methods, and 2) a newly developed DNA metabarcoding diet analysis technique designed to identify prey species and quantify their relative proportions in seal diets. The DNA-based dataset described herein contains records from 4,625 harbour seal scats representing 52 haulout sites, 7 years, 12 calendar months, and a total of 11,641 prey identifications. Prey morphological hard parts analyses were conducted alongside, resulting in corresponding hard parts data for 92% of the scat DNA samples. A custom-built prey DNA sequence database containing 201 species (192 fishes, 9 cephalopods) is also provided.
Measurement(s)
diet
Technology Type(s)
DNA metabarcoding diet analysis
Sample Characteristic - Organism
Phoca vitulina
Machine-accessible metadata file describing the reported data:
https://doi.org/10.6084/m9.figshare.19077809</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>35236843</pmid><doi>10.1038/s41597-022-01152-5</doi><tpages>1</tpages><orcidid>https://orcid.org/0000-0002-6182-9440</orcidid><orcidid>https://orcid.org/0000-0001-9357-9151</orcidid><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 2052-4463 |
| ispartof | Scientific data, 2022-03, Vol.9 (1), p.68-68, Article 68 |
| issn | 2052-4463 2052-4463 |
| language | eng |
| recordid | cdi_doaj_primary_oai_doaj_org_article_016d010c77904a6f9cc140c2ee4ab6c2 |
| source | Publicly Available Content Database; PubMed Central; Springer Nature - nature.com Journals - Fully Open Access |
| subjects | 631/601/18 704/158/1144 704/158/2452 704/829/826 Animals Data Descriptor Deoxyribonucleic acid Diet DNA DNA Barcoding, Taxonomic Ecosystem Ecosystem management Ecosystems Genetic testing Humanities and Social Sciences multidisciplinary Nucleotide sequence Phoca Phoca vitulina Prey Science Science (multidisciplinary) Species |
| title | Data on the diets of Salish Sea harbour seals from DNA metabarcoding |
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