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Identification of a novel monocyte/macrophage-related gene signature for predicting survival and immune response in acute myeloid leukemia
Acute myeloid leukemia (AML) is a heterogeneous hematological tumor with poor immunotherapy effect. This study was to develop a monocyte/macrophage-related prognostic risk score (MMrisk) and identify new therapeutic biomarkers for AML. We utilized differentially expressed genes (DEGs) in combination...
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description | Acute myeloid leukemia (AML) is a heterogeneous hematological tumor with poor immunotherapy effect. This study was to develop a monocyte/macrophage-related prognostic risk score (MMrisk) and identify new therapeutic biomarkers for AML. We utilized differentially expressed genes (DEGs) in combination with single-cell RNA sequencing to identify monocyte/macrophage-related genes (MMGs). Eight genes were selected for the construction of a MMrisk model using univariate Cox regression analysis and LASSO regression analysis. We then validated the MMrisk on two GEO datasets. Lastly, we investigated the immunologic characteristics and advantages of immunotherapy and potential targeted drugs for MMrisk groups. Our study identified that the MMrisk is composed of eight MMGs, including HOPX, CSTB, MAP3K1, LGALS1, CFD, MXD1, CASP1 and BCL2A1. The low MMrisk group survived longer than high MMrisk group (P |
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This study was to develop a monocyte/macrophage-related prognostic risk score (MMrisk) and identify new therapeutic biomarkers for AML. We utilized differentially expressed genes (DEGs) in combination with single-cell RNA sequencing to identify monocyte/macrophage-related genes (MMGs). Eight genes were selected for the construction of a MMrisk model using univariate Cox regression analysis and LASSO regression analysis. We then validated the MMrisk on two GEO datasets. Lastly, we investigated the immunologic characteristics and advantages of immunotherapy and potential targeted drugs for MMrisk groups. Our study identified that the MMrisk is composed of eight MMGs, including HOPX, CSTB, MAP3K1, LGALS1, CFD, MXD1, CASP1 and BCL2A1. The low MMrisk group survived longer than high MMrisk group (P < 0.001). The high MMrisk group was positively correlated with B cells, plasma cells, CD4 memory cells, Mast cells, CAFs, monocytes, M2 macrophages, Endothelial, tumor mutation, and most immune checkpoints (PD1, Tim-3, CTLA4, LAG3). Furthermore, drug sensitivity analysis showed that AZD.2281, Axitinib, AUY922, ABT.888, and ATRA were effective in high-risk MM patients. Our research shows that MMrisk is a potential biomarker which is helpful to identify the molecular characteristics of AML immunology.</description><identifier>ISSN: 2045-2322</identifier><identifier>EISSN: 2045-2322</identifier><identifier>DOI: 10.1038/s41598-024-64567-7</identifier><identifier>PMID: 38890346</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>631/67/1857 ; 631/67/68 ; Acute myeloid leukemia ; AML ; Biomarkers ; Biomarkers, Tumor - genetics ; CD4 antigen ; CTLA-4 protein ; Female ; Gene Expression Profiling ; Gene Expression Regulation, Leukemic ; Humanities and Social Sciences ; Humans ; Immune checkpoint ; Immune response ; Immunology ; Immunosuppressive agents ; Immunotherapy ; Immunotherapy - methods ; Leukemia ; Leukemia, Myeloid, Acute - genetics ; Leukemia, Myeloid, Acute - immunology ; Leukemia, Myeloid, Acute - mortality ; Lymphocytes B ; Macrophages ; Macrophages - immunology ; Macrophages - metabolism ; Male ; Mast cells ; Memory cells ; Middle Aged ; Monocyte/macrophage ; Monocytes ; Monocytes - immunology ; Monocytes - metabolism ; multidisciplinary ; PD-1 protein ; Plasma cells ; Prognosis ; Regression analysis ; Science ; Science (multidisciplinary) ; Sensitivity analysis ; Transcriptome ; Tumor immune microenvironment ; Tumors</subject><ispartof>Scientific reports, 2024-06, Vol.14 (1), p.14012-14</ispartof><rights>The Author(s) 2024</rights><rights>2024. The Author(s).</rights><rights>The Author(s) 2024. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-d379t-be5ec369c333d2ccd0626e20c736e4d38958538a5351ee64b686f941ee0138483</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/3069392744/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/3069392744?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,25753,27924,27925,37012,37013,44590,53791,53793,75126</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38890346$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Zhan, Yun</creatorcontrib><creatorcontrib>Ma, Sixing</creatorcontrib><creatorcontrib>Zhang, Tianzhuo</creatorcontrib><creatorcontrib>Zhang, Luxin</creatorcontrib><creatorcontrib>Zhao, Peng</creatorcontrib><creatorcontrib>Yang, Xueying</creatorcontrib><creatorcontrib>Liu, Min</creatorcontrib><creatorcontrib>Cheng, Weiwei</creatorcontrib><creatorcontrib>Li, Ya</creatorcontrib><creatorcontrib>Wang, Jishi</creatorcontrib><title>Identification of a novel monocyte/macrophage-related gene signature for predicting survival and immune response in acute myeloid leukemia</title><title>Scientific reports</title><addtitle>Sci Rep</addtitle><addtitle>Sci Rep</addtitle><description>Acute myeloid leukemia (AML) is a heterogeneous hematological tumor with poor immunotherapy effect. This study was to develop a monocyte/macrophage-related prognostic risk score (MMrisk) and identify new therapeutic biomarkers for AML. We utilized differentially expressed genes (DEGs) in combination with single-cell RNA sequencing to identify monocyte/macrophage-related genes (MMGs). Eight genes were selected for the construction of a MMrisk model using univariate Cox regression analysis and LASSO regression analysis. We then validated the MMrisk on two GEO datasets. Lastly, we investigated the immunologic characteristics and advantages of immunotherapy and potential targeted drugs for MMrisk groups. Our study identified that the MMrisk is composed of eight MMGs, including HOPX, CSTB, MAP3K1, LGALS1, CFD, MXD1, CASP1 and BCL2A1. The low MMrisk group survived longer than high MMrisk group (P < 0.001). The high MMrisk group was positively correlated with B cells, plasma cells, CD4 memory cells, Mast cells, CAFs, monocytes, M2 macrophages, Endothelial, tumor mutation, and most immune checkpoints (PD1, Tim-3, CTLA4, LAG3). Furthermore, drug sensitivity analysis showed that AZD.2281, Axitinib, AUY922, ABT.888, and ATRA were effective in high-risk MM patients. Our research shows that MMrisk is a potential biomarker which is helpful to identify the molecular characteristics of AML immunology.</description><subject>631/67/1857</subject><subject>631/67/68</subject><subject>Acute myeloid leukemia</subject><subject>AML</subject><subject>Biomarkers</subject><subject>Biomarkers, Tumor - genetics</subject><subject>CD4 antigen</subject><subject>CTLA-4 protein</subject><subject>Female</subject><subject>Gene Expression Profiling</subject><subject>Gene Expression Regulation, Leukemic</subject><subject>Humanities and Social Sciences</subject><subject>Humans</subject><subject>Immune checkpoint</subject><subject>Immune response</subject><subject>Immunology</subject><subject>Immunosuppressive agents</subject><subject>Immunotherapy</subject><subject>Immunotherapy - methods</subject><subject>Leukemia</subject><subject>Leukemia, Myeloid, Acute - genetics</subject><subject>Leukemia, Myeloid, Acute - immunology</subject><subject>Leukemia, Myeloid, Acute - mortality</subject><subject>Lymphocytes B</subject><subject>Macrophages</subject><subject>Macrophages - immunology</subject><subject>Macrophages - metabolism</subject><subject>Male</subject><subject>Mast cells</subject><subject>Memory cells</subject><subject>Middle Aged</subject><subject>Monocyte/macrophage</subject><subject>Monocytes</subject><subject>Monocytes - immunology</subject><subject>Monocytes - metabolism</subject><subject>multidisciplinary</subject><subject>PD-1 protein</subject><subject>Plasma cells</subject><subject>Prognosis</subject><subject>Regression analysis</subject><subject>Science</subject><subject>Science (multidisciplinary)</subject><subject>Sensitivity analysis</subject><subject>Transcriptome</subject><subject>Tumor immune microenvironment</subject><subject>Tumors</subject><issn>2045-2322</issn><issn>2045-2322</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><sourceid>DOA</sourceid><recordid>eNpdks-OFCEQhztG427WfQEPhsSLl3aBAro5GbPxzySbeNEzYaC6l7EbRuieZF7BpxZ3Vt2VC4T68qUofk3zktG3jEJ_VQSTum8pF60SUnVt96Q551TIlgPnTx-cz5rLUna0Lsm1YPp5cwZ9rykIdd783HiMSxiCs0tIkaSBWBLTAScyp5jcccGr2bqc9rd2xDbjZBf0ZMSIpIQx2mXNSIaUyT6jD24JcSRlzYdwsBOx0ZMwz2uFM5Z9igVJiMS6dUEyH3FKwZMJ1-84B_uieTbYqeDl_X7RfPv44ev15_bmy6fN9fub1kOnl3aLEh0o7QDAc-c8VVwhp64DhcJDr2UvobcSJENUYqt6NdR3I1IGvejhotmcvD7ZndnnMNt8NMkGc3eR8mhsXoKb0FDolGLCOXR1mgK3SD1FJrQQnglJq-vdybVftzN6V2eZ7fRI-rgSw60Z08EwxmqjAqrhzb0hpx8rlsXMoTicJhsxrcUA7WinO-Cyoq__Q3dpzbHOqlJKg-adEJV69bClv738-fMKwAkotRRHzP80jJrf4TKncJkaLnMXLtPBL5nhwWc</recordid><startdate>20240618</startdate><enddate>20240618</enddate><creator>Zhan, Yun</creator><creator>Ma, Sixing</creator><creator>Zhang, Tianzhuo</creator><creator>Zhang, Luxin</creator><creator>Zhao, Peng</creator><creator>Yang, Xueying</creator><creator>Liu, Min</creator><creator>Cheng, Weiwei</creator><creator>Li, Ya</creator><creator>Wang, Jishi</creator><general>Nature Publishing Group UK</general><general>Nature Publishing Group</general><general>Nature Portfolio</general><scope>C6C</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7P</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20240618</creationdate><title>Identification of a novel monocyte/macrophage-related gene signature for predicting survival and immune response in acute myeloid leukemia</title><author>Zhan, Yun ; Ma, Sixing ; Zhang, Tianzhuo ; Zhang, Luxin ; Zhao, Peng ; Yang, Xueying ; Liu, Min ; Cheng, Weiwei ; Li, Ya ; Wang, Jishi</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-d379t-be5ec369c333d2ccd0626e20c736e4d38958538a5351ee64b686f941ee0138483</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>631/67/1857</topic><topic>631/67/68</topic><topic>Acute myeloid leukemia</topic><topic>AML</topic><topic>Biomarkers</topic><topic>Biomarkers, Tumor - 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Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Scientific reports</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Zhan, Yun</au><au>Ma, Sixing</au><au>Zhang, Tianzhuo</au><au>Zhang, Luxin</au><au>Zhao, Peng</au><au>Yang, Xueying</au><au>Liu, Min</au><au>Cheng, Weiwei</au><au>Li, Ya</au><au>Wang, Jishi</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Identification of a novel monocyte/macrophage-related gene signature for predicting survival and immune response in acute myeloid leukemia</atitle><jtitle>Scientific reports</jtitle><stitle>Sci Rep</stitle><addtitle>Sci Rep</addtitle><date>2024-06-18</date><risdate>2024</risdate><volume>14</volume><issue>1</issue><spage>14012</spage><epage>14</epage><pages>14012-14</pages><issn>2045-2322</issn><eissn>2045-2322</eissn><abstract>Acute myeloid leukemia (AML) is a heterogeneous hematological tumor with poor immunotherapy effect. This study was to develop a monocyte/macrophage-related prognostic risk score (MMrisk) and identify new therapeutic biomarkers for AML. We utilized differentially expressed genes (DEGs) in combination with single-cell RNA sequencing to identify monocyte/macrophage-related genes (MMGs). Eight genes were selected for the construction of a MMrisk model using univariate Cox regression analysis and LASSO regression analysis. We then validated the MMrisk on two GEO datasets. Lastly, we investigated the immunologic characteristics and advantages of immunotherapy and potential targeted drugs for MMrisk groups. Our study identified that the MMrisk is composed of eight MMGs, including HOPX, CSTB, MAP3K1, LGALS1, CFD, MXD1, CASP1 and BCL2A1. The low MMrisk group survived longer than high MMrisk group (P < 0.001). The high MMrisk group was positively correlated with B cells, plasma cells, CD4 memory cells, Mast cells, CAFs, monocytes, M2 macrophages, Endothelial, tumor mutation, and most immune checkpoints (PD1, Tim-3, CTLA4, LAG3). Furthermore, drug sensitivity analysis showed that AZD.2281, Axitinib, AUY922, ABT.888, and ATRA were effective in high-risk MM patients. Our research shows that MMrisk is a potential biomarker which is helpful to identify the molecular characteristics of AML immunology.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>38890346</pmid><doi>10.1038/s41598-024-64567-7</doi><tpages>14</tpages><oa>free_for_read</oa></addata></record> |
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subjects | 631/67/1857 631/67/68 Acute myeloid leukemia AML Biomarkers Biomarkers, Tumor - genetics CD4 antigen CTLA-4 protein Female Gene Expression Profiling Gene Expression Regulation, Leukemic Humanities and Social Sciences Humans Immune checkpoint Immune response Immunology Immunosuppressive agents Immunotherapy Immunotherapy - methods Leukemia Leukemia, Myeloid, Acute - genetics Leukemia, Myeloid, Acute - immunology Leukemia, Myeloid, Acute - mortality Lymphocytes B Macrophages Macrophages - immunology Macrophages - metabolism Male Mast cells Memory cells Middle Aged Monocyte/macrophage Monocytes Monocytes - immunology Monocytes - metabolism multidisciplinary PD-1 protein Plasma cells Prognosis Regression analysis Science Science (multidisciplinary) Sensitivity analysis Transcriptome Tumor immune microenvironment Tumors |
title | Identification of a novel monocyte/macrophage-related gene signature for predicting survival and immune response in acute myeloid leukemia |
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