The Drosophila Individual Activity Monitoring and Detection System (DIAMonDS)

• Published in: eLife 2020-11, Vol.9
• Main Authors: Seong, Ki-Hyeon, Matsumura, Taishi, Shimada-Niwa, Yuko, Niwa, Ryusuke, Kang, Siu
• Format: Article
• Language: English
• Subjects: Algorithms; Animals; Detection equipment; Developmental Biology; Drosophila; Drosophila melanogaster; Drosophila melanogaster - growth & development; Drosophila melanogaster - physiology; eclosion; Female; Fruit flies (Tephritidae); high-throughput; Life Cycle Stages; lifespan; Male; Monitoring, Physiologic - methods; Movement; pupariation; survival test; Time-Lapse Imaging; Tools and Resources; Web applications
• ISSN: 2050-084X; 2050-084X
• DOI: 10.7554/elife.58630

Here, we have developed DIAMonDS ( Individual Activity Monitoring and Detection System) comprising time-lapse imaging by a charge-coupled device (CCD) flatbed scanner and Sapphire, a novel algorithm and web application. DIAMonDS automatically and sequentially identified the transition time points of multiple life cycle events such as pupariation, eclosion, and death in individual flies at high temporal resolution and on a large scale. DIAMonDS performed simultaneous multiple scans to measure individual deaths (≤1152 flies per scanner) and pupariation and eclosion timings (≤288 flies per scanner) under various chemical exposures, environmental conditions, and genetic backgrounds. DIAMonDS correctly identified 74-85% of the pupariation and eclosion events and ~ 92% of the death events within ± 10 scanning frames. This system is a powerful tool for studying the influences of genetic and environmental factors on fruit flies and efficient, high-throughput genetic and chemical screening in drug discovery.