Loading…

Toxic Activity, Molecular Modeling and Docking Simulations of Bacillus thuringiensis Cry11 Toxin Variants Obtained via DNA Shuffling

The Cry11 family belongs to a large group of δ-endotoxins that share three distinct structural domains. Among the dipteran-active toxins referred to as three-domain Cry11 toxins, the Cry11Aa protein from subsp. ( ) has been the most extensively studied. Despite the potential of as an effective biolo...

Full description

Saved in:
Bibliographic Details
Published in:Frontiers in microbiology 2018-10, Vol.9, p.2461-2461
Main Authors: Florez, Alvaro Mauricio, Suarez-Barrera, Miguel Orlando, Morales, Gloria M, Rivera, Karen Viviana, Orduz, Sergio, Ochoa, Rodrigo, Guerra, Diego, Muskus, Carlos
Format: Article
Language:English
Subjects:
Citations: Items that this one cites
Items that cite this one
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by cdi_FETCH-LOGICAL-c462t-9f8814f2b07d524e3654357644ea9a34d93426f3d67a1e635316b657beeb358e3
cites cdi_FETCH-LOGICAL-c462t-9f8814f2b07d524e3654357644ea9a34d93426f3d67a1e635316b657beeb358e3
container_end_page 2461
container_issue
container_start_page 2461
container_title Frontiers in microbiology
container_volume 9
creator Florez, Alvaro Mauricio
Suarez-Barrera, Miguel Orlando
Morales, Gloria M
Rivera, Karen Viviana
Orduz, Sergio
Ochoa, Rodrigo
Guerra, Diego
Muskus, Carlos
description The Cry11 family belongs to a large group of δ-endotoxins that share three distinct structural domains. Among the dipteran-active toxins referred to as three-domain Cry11 toxins, the Cry11Aa protein from subsp. ( ) has been the most extensively studied. Despite the potential of as an effective biological control agent, the understanding of Cry11 toxins remains incomplete. In this study, five Cry11 variants obtained via DNA shuffling displayed toxic activity against and . Three of these Cry11 variants (8, 23, and 79) were characterized via 3D modeling and analysis of docking with ALP1. The relevant mutations in these variants, such as deletions, insertions and point mutations, are discussed in relation to their structural domains, toxic activities and toxin-receptor interactions. Importantly, deletion of the N-terminal segment in domain I was not associated with any change in toxic activity, and domain III exhibited higher sequence variability than domains I and II. Variant 8 exhibited up to 3.78- and 6.09-fold higher toxicity to than Cry11Bb and Cry11Aa, respectively. Importantly, variant 79 showed an α-helix conformation at the C-terminus and formed crystals retaining toxic activity. These findings indicate that five Cry11 variants were preferentially reassembled from the gene during DNA shuffling. The mutations described in loop 2 and loop 3 of domain II provide valuable information regarding the activity of Cry11 toxins against and larvae and reveal new insights into the application of directed evolution strategies to study the genetic variability of specific domains in family genes.
doi_str_mv 10.3389/fmicb.2018.02461
format article
fullrecord <record><control><sourceid>proquest_doaj_</sourceid><recordid>TN_cdi_doaj_primary_oai_doaj_org_article_0bdec2bcaeb14171adb0aa18343238bd</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><doaj_id>oai_doaj_org_article_0bdec2bcaeb14171adb0aa18343238bd</doaj_id><sourcerecordid>2129530924</sourcerecordid><originalsourceid>FETCH-LOGICAL-c462t-9f8814f2b07d524e3654357644ea9a34d93426f3d67a1e635316b657beeb358e3</originalsourceid><addsrcrecordid>eNpVks1v1DAQxSMEolXpnRPykQO72B7HSS5Iy5aPSoUeWhA3a_yRXZds3NrOir3zh5Pslqr1wX7ym_mNJb-ieM3oHKBu3rcbb_ScU1bPKReSPSuOmZRiBpT_ev5IHxWnKd3QcQnKx_1lcQQUagmsPC7-Xoc_3pCFyX7r8-4d-RY6Z4YO46is63y_IthbchbM70lf-c1oZh_6REJLPqLxXTckktdDHH3v-uQTWcYdY2RC9-QnRo99TuRSZ_S9s2TrkZx9X5Cr9dC204RXxYsWu-RO78-T4sfnT9fLr7OLyy_ny8XFzAjJ86xp65qJlmta2ZILB7IUUFZSCIcNgrANCC5bsLJC5iSUwKSWZaWd01DWDk6K8wPXBrxRt9FvMO5UQK_2FyGuFMbsTecU1dYZrg06zQSrGFpNEVkNAjjU2o6sDwfW7aA3zhrX54jdE-hTp_drtQpbJVnTQENHwNt7QAx3g0tZbXwyruuwd2FIijPelEAbLsZSeig1MaQUXfswhlE1ZUHts6CmLKh9FsaWN4-f99Dw_-fhH0cEsi8</addsrcrecordid><sourcetype>Open Website</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2129530924</pqid></control><display><type>article</type><title>Toxic Activity, Molecular Modeling and Docking Simulations of Bacillus thuringiensis Cry11 Toxin Variants Obtained via DNA Shuffling</title><source>PubMed Central</source><creator>Florez, Alvaro Mauricio ; Suarez-Barrera, Miguel Orlando ; Morales, Gloria M ; Rivera, Karen Viviana ; Orduz, Sergio ; Ochoa, Rodrigo ; Guerra, Diego ; Muskus, Carlos</creator><creatorcontrib>Florez, Alvaro Mauricio ; Suarez-Barrera, Miguel Orlando ; Morales, Gloria M ; Rivera, Karen Viviana ; Orduz, Sergio ; Ochoa, Rodrigo ; Guerra, Diego ; Muskus, Carlos</creatorcontrib><description>The Cry11 family belongs to a large group of δ-endotoxins that share three distinct structural domains. Among the dipteran-active toxins referred to as three-domain Cry11 toxins, the Cry11Aa protein from subsp. ( ) has been the most extensively studied. Despite the potential of as an effective biological control agent, the understanding of Cry11 toxins remains incomplete. In this study, five Cry11 variants obtained via DNA shuffling displayed toxic activity against and . Three of these Cry11 variants (8, 23, and 79) were characterized via 3D modeling and analysis of docking with ALP1. The relevant mutations in these variants, such as deletions, insertions and point mutations, are discussed in relation to their structural domains, toxic activities and toxin-receptor interactions. Importantly, deletion of the N-terminal segment in domain I was not associated with any change in toxic activity, and domain III exhibited higher sequence variability than domains I and II. Variant 8 exhibited up to 3.78- and 6.09-fold higher toxicity to than Cry11Bb and Cry11Aa, respectively. Importantly, variant 79 showed an α-helix conformation at the C-terminus and formed crystals retaining toxic activity. These findings indicate that five Cry11 variants were preferentially reassembled from the gene during DNA shuffling. The mutations described in loop 2 and loop 3 of domain II provide valuable information regarding the activity of Cry11 toxins against and larvae and reveal new insights into the application of directed evolution strategies to study the genetic variability of specific domains in family genes.</description><identifier>ISSN: 1664-302X</identifier><identifier>EISSN: 1664-302X</identifier><identifier>DOI: 10.3389/fmicb.2018.02461</identifier><identifier>PMID: 30386315</identifier><language>eng</language><publisher>Switzerland: Frontiers Media S.A</publisher><subject>Aedes aegypti ; Bacillus thuringiensis ; Cry11 ; Culex quinquefasciatus ; DNA shuffling ; docking ; Microbiology</subject><ispartof>Frontiers in microbiology, 2018-10, Vol.9, p.2461-2461</ispartof><rights>Copyright © 2018 Florez, Suarez-Barrera, Morales, Rivera, Orduz, Ochoa, Guerra and Muskus. 2018 Florez, Suarez-Barrera, Morales, Rivera, Orduz, Ochoa, Guerra and Muskus</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c462t-9f8814f2b07d524e3654357644ea9a34d93426f3d67a1e635316b657beeb358e3</citedby><cites>FETCH-LOGICAL-c462t-9f8814f2b07d524e3654357644ea9a34d93426f3d67a1e635316b657beeb358e3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6199390/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6199390/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,27922,27923,53789,53791</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/30386315$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Florez, Alvaro Mauricio</creatorcontrib><creatorcontrib>Suarez-Barrera, Miguel Orlando</creatorcontrib><creatorcontrib>Morales, Gloria M</creatorcontrib><creatorcontrib>Rivera, Karen Viviana</creatorcontrib><creatorcontrib>Orduz, Sergio</creatorcontrib><creatorcontrib>Ochoa, Rodrigo</creatorcontrib><creatorcontrib>Guerra, Diego</creatorcontrib><creatorcontrib>Muskus, Carlos</creatorcontrib><title>Toxic Activity, Molecular Modeling and Docking Simulations of Bacillus thuringiensis Cry11 Toxin Variants Obtained via DNA Shuffling</title><title>Frontiers in microbiology</title><addtitle>Front Microbiol</addtitle><description>The Cry11 family belongs to a large group of δ-endotoxins that share three distinct structural domains. Among the dipteran-active toxins referred to as three-domain Cry11 toxins, the Cry11Aa protein from subsp. ( ) has been the most extensively studied. Despite the potential of as an effective biological control agent, the understanding of Cry11 toxins remains incomplete. In this study, five Cry11 variants obtained via DNA shuffling displayed toxic activity against and . Three of these Cry11 variants (8, 23, and 79) were characterized via 3D modeling and analysis of docking with ALP1. The relevant mutations in these variants, such as deletions, insertions and point mutations, are discussed in relation to their structural domains, toxic activities and toxin-receptor interactions. Importantly, deletion of the N-terminal segment in domain I was not associated with any change in toxic activity, and domain III exhibited higher sequence variability than domains I and II. Variant 8 exhibited up to 3.78- and 6.09-fold higher toxicity to than Cry11Bb and Cry11Aa, respectively. Importantly, variant 79 showed an α-helix conformation at the C-terminus and formed crystals retaining toxic activity. These findings indicate that five Cry11 variants were preferentially reassembled from the gene during DNA shuffling. The mutations described in loop 2 and loop 3 of domain II provide valuable information regarding the activity of Cry11 toxins against and larvae and reveal new insights into the application of directed evolution strategies to study the genetic variability of specific domains in family genes.</description><subject>Aedes aegypti</subject><subject>Bacillus thuringiensis</subject><subject>Cry11</subject><subject>Culex quinquefasciatus</subject><subject>DNA shuffling</subject><subject>docking</subject><subject>Microbiology</subject><issn>1664-302X</issn><issn>1664-302X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><sourceid>DOA</sourceid><recordid>eNpVks1v1DAQxSMEolXpnRPykQO72B7HSS5Iy5aPSoUeWhA3a_yRXZds3NrOir3zh5Pslqr1wX7ym_mNJb-ieM3oHKBu3rcbb_ScU1bPKReSPSuOmZRiBpT_ev5IHxWnKd3QcQnKx_1lcQQUagmsPC7-Xoc_3pCFyX7r8-4d-RY6Z4YO46is63y_IthbchbM70lf-c1oZh_6REJLPqLxXTckktdDHH3v-uQTWcYdY2RC9-QnRo99TuRSZ_S9s2TrkZx9X5Cr9dC204RXxYsWu-RO78-T4sfnT9fLr7OLyy_ny8XFzAjJ86xp65qJlmta2ZILB7IUUFZSCIcNgrANCC5bsLJC5iSUwKSWZaWd01DWDk6K8wPXBrxRt9FvMO5UQK_2FyGuFMbsTecU1dYZrg06zQSrGFpNEVkNAjjU2o6sDwfW7aA3zhrX54jdE-hTp_drtQpbJVnTQENHwNt7QAx3g0tZbXwyruuwd2FIijPelEAbLsZSeig1MaQUXfswhlE1ZUHts6CmLKh9FsaWN4-f99Dw_-fhH0cEsi8</recordid><startdate>20181017</startdate><enddate>20181017</enddate><creator>Florez, Alvaro Mauricio</creator><creator>Suarez-Barrera, Miguel Orlando</creator><creator>Morales, Gloria M</creator><creator>Rivera, Karen Viviana</creator><creator>Orduz, Sergio</creator><creator>Ochoa, Rodrigo</creator><creator>Guerra, Diego</creator><creator>Muskus, Carlos</creator><general>Frontiers Media S.A</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20181017</creationdate><title>Toxic Activity, Molecular Modeling and Docking Simulations of Bacillus thuringiensis Cry11 Toxin Variants Obtained via DNA Shuffling</title><author>Florez, Alvaro Mauricio ; Suarez-Barrera, Miguel Orlando ; Morales, Gloria M ; Rivera, Karen Viviana ; Orduz, Sergio ; Ochoa, Rodrigo ; Guerra, Diego ; Muskus, Carlos</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c462t-9f8814f2b07d524e3654357644ea9a34d93426f3d67a1e635316b657beeb358e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>Aedes aegypti</topic><topic>Bacillus thuringiensis</topic><topic>Cry11</topic><topic>Culex quinquefasciatus</topic><topic>DNA shuffling</topic><topic>docking</topic><topic>Microbiology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Florez, Alvaro Mauricio</creatorcontrib><creatorcontrib>Suarez-Barrera, Miguel Orlando</creatorcontrib><creatorcontrib>Morales, Gloria M</creatorcontrib><creatorcontrib>Rivera, Karen Viviana</creatorcontrib><creatorcontrib>Orduz, Sergio</creatorcontrib><creatorcontrib>Ochoa, Rodrigo</creatorcontrib><creatorcontrib>Guerra, Diego</creatorcontrib><creatorcontrib>Muskus, Carlos</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>Directory of Open Access Journals</collection><jtitle>Frontiers in microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Florez, Alvaro Mauricio</au><au>Suarez-Barrera, Miguel Orlando</au><au>Morales, Gloria M</au><au>Rivera, Karen Viviana</au><au>Orduz, Sergio</au><au>Ochoa, Rodrigo</au><au>Guerra, Diego</au><au>Muskus, Carlos</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Toxic Activity, Molecular Modeling and Docking Simulations of Bacillus thuringiensis Cry11 Toxin Variants Obtained via DNA Shuffling</atitle><jtitle>Frontiers in microbiology</jtitle><addtitle>Front Microbiol</addtitle><date>2018-10-17</date><risdate>2018</risdate><volume>9</volume><spage>2461</spage><epage>2461</epage><pages>2461-2461</pages><issn>1664-302X</issn><eissn>1664-302X</eissn><abstract>The Cry11 family belongs to a large group of δ-endotoxins that share three distinct structural domains. Among the dipteran-active toxins referred to as three-domain Cry11 toxins, the Cry11Aa protein from subsp. ( ) has been the most extensively studied. Despite the potential of as an effective biological control agent, the understanding of Cry11 toxins remains incomplete. In this study, five Cry11 variants obtained via DNA shuffling displayed toxic activity against and . Three of these Cry11 variants (8, 23, and 79) were characterized via 3D modeling and analysis of docking with ALP1. The relevant mutations in these variants, such as deletions, insertions and point mutations, are discussed in relation to their structural domains, toxic activities and toxin-receptor interactions. Importantly, deletion of the N-terminal segment in domain I was not associated with any change in toxic activity, and domain III exhibited higher sequence variability than domains I and II. Variant 8 exhibited up to 3.78- and 6.09-fold higher toxicity to than Cry11Bb and Cry11Aa, respectively. Importantly, variant 79 showed an α-helix conformation at the C-terminus and formed crystals retaining toxic activity. These findings indicate that five Cry11 variants were preferentially reassembled from the gene during DNA shuffling. The mutations described in loop 2 and loop 3 of domain II provide valuable information regarding the activity of Cry11 toxins against and larvae and reveal new insights into the application of directed evolution strategies to study the genetic variability of specific domains in family genes.</abstract><cop>Switzerland</cop><pub>Frontiers Media S.A</pub><pmid>30386315</pmid><doi>10.3389/fmicb.2018.02461</doi><tpages>1</tpages><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 1664-302X
ispartof Frontiers in microbiology, 2018-10, Vol.9, p.2461-2461
issn 1664-302X
1664-302X
language eng
recordid cdi_doaj_primary_oai_doaj_org_article_0bdec2bcaeb14171adb0aa18343238bd
source PubMed Central
subjects Aedes aegypti
Bacillus thuringiensis
Cry11
Culex quinquefasciatus
DNA shuffling
docking
Microbiology
title Toxic Activity, Molecular Modeling and Docking Simulations of Bacillus thuringiensis Cry11 Toxin Variants Obtained via DNA Shuffling
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-14T13%3A30%3A17IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_doaj_&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Toxic%20Activity,%20Molecular%20Modeling%20and%20Docking%20Simulations%20of%20Bacillus%20thuringiensis%20Cry11%20Toxin%20Variants%20Obtained%20via%20DNA%20Shuffling&rft.jtitle=Frontiers%20in%20microbiology&rft.au=Florez,%20Alvaro%20Mauricio&rft.date=2018-10-17&rft.volume=9&rft.spage=2461&rft.epage=2461&rft.pages=2461-2461&rft.issn=1664-302X&rft.eissn=1664-302X&rft_id=info:doi/10.3389/fmicb.2018.02461&rft_dat=%3Cproquest_doaj_%3E2129530924%3C/proquest_doaj_%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c462t-9f8814f2b07d524e3654357644ea9a34d93426f3d67a1e635316b657beeb358e3%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=2129530924&rft_id=info:pmid/30386315&rfr_iscdi=true