Ecological Divergence Within the Enterobacterial Genus Sodalis : From Insect Symbionts to Inhabitants of Decomposing Deadwood

• Published in: Frontiers in microbiology 2021-06, Vol.12, p.668644-668644
• Main Authors: Tláskal, Vojtěch, Pylro, Victor Satler, Žifčáková, Lucia, Baldrian, Petr
• Format: Article
• Language: English
• Subjects: deadwood; free-living; insect symbionts; Microbiology; nitrogen fixation; non-symbiotic; Sodalis
• ISSN: 1664-302X; 1664-302X
• DOI: 10.3389/fmicb.2021.668644

The bacterial genus is represented by insect endosymbionts as well as free-living species. While the former have been studied frequently, the distribution of the latter is not yet clear. Here, we present a description of a free-living strain, sp. nov., originating from decomposing deadwood. The favored occurrence of in deadwood is confirmed by both 16S rRNA gene distribution and metagenome data. Pangenome analysis of available genomes shows at least three groups within the genus: deadwood-associated strains, tsetse fly endosymbionts and endosymbionts of other insects. This differentiation is consistent in terms of the gene frequency level, genome similarity and carbohydrate-active enzyme composition of the genomes. Deadwood-associated strains contain genes for active decomposition of biopolymers of plant and fungal origin and can utilize more diverse carbon sources than their symbiotic relatives. Deadwood-associated strains, but not other strains, have the genetic potential to fix N , and the corresponding genes are expressed in deadwood. Nitrogenase genes are located within the genomes of , including , at multiple loci represented by more gene variants. We show decomposing wood to be a previously undescribed habitat of the genus that appears to show striking ecological divergence.