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Functional Expression and Characterization of Tetrachloroethene Dehalogenase From Geobacter sp
Reductive dehalogenase (RDase) consists of two parts, RdhA and RdhB. RdhA is the catalytic subunit, harboring a cobalamin cofactor and two Fe-S clusters. RdhA is anchored to the cytoplasmic membrane via the membrane anchoring subunit, RdhB. There are many genes encoding RDases in the genome of organ...
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Published in: | Frontiers in microbiology 2018-08, Vol.9, p.1774-1774 |
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container_title | Frontiers in microbiology |
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creator | Nakamura, Ryuki Obata, Tomohiro Nojima, Ryota Hashimoto, Yohey Noguchi, Keiichi Ogawa, Takahiro Yohda, Masafumi |
description | Reductive dehalogenase (RDase) consists of two parts, RdhA and RdhB. RdhA is the catalytic subunit, harboring a cobalamin cofactor and two Fe-S clusters. RdhA is anchored to the cytoplasmic membrane via the membrane anchoring subunit, RdhB. There are many genes encoding RDases in the genome of organohalide-respiring bacteria, including
spp. However, most genes have not been functionally characterized. Biochemical studies on RDases have been hampered by difficulties encountered in their expression and purification. In this study, we have expressed, purified and characterized RdhA of RDase for tetrachloroethene (PceA) from
sp. PceA was expressed as a fusion protein with a trigger factor tag in
. PceA was purified and denatured in aerobic condition. Subsequently, this protein was refolded in the presence of FeCl
, Na
S and cobalamin in anaerobic condition. The reconstituted PceA exhibited dechlorination ability for tetrachloroethene. UV-Vis spectroscopy has shown that it contains cobalamin and Fe-S clusters. Since this method requires anaerobic manipulation only in the reconstituting process and has a relatively high yield, it will enable further biochemical studies of RDases. |
doi_str_mv | 10.3389/fmicb.2018.01774 |
format | article |
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spp. However, most genes have not been functionally characterized. Biochemical studies on RDases have been hampered by difficulties encountered in their expression and purification. In this study, we have expressed, purified and characterized RdhA of RDase for tetrachloroethene (PceA) from
sp. PceA was expressed as a fusion protein with a trigger factor tag in
. PceA was purified and denatured in aerobic condition. Subsequently, this protein was refolded in the presence of FeCl
, Na
S and cobalamin in anaerobic condition. The reconstituted PceA exhibited dechlorination ability for tetrachloroethene. UV-Vis spectroscopy has shown that it contains cobalamin and Fe-S clusters. Since this method requires anaerobic manipulation only in the reconstituting process and has a relatively high yield, it will enable further biochemical studies of RDases.</description><identifier>ISSN: 1664-302X</identifier><identifier>EISSN: 1664-302X</identifier><identifier>DOI: 10.3389/fmicb.2018.01774</identifier><identifier>PMID: 30147676</identifier><language>eng</language><publisher>Switzerland: Frontiers Media S.A</publisher><subject>cobalamin ; Geobacter ; Microbiology ; reconstitution ; reductive dehalogenase ; tetrachloroethene</subject><ispartof>Frontiers in microbiology, 2018-08, Vol.9, p.1774-1774</ispartof><rights>Copyright © 2018 Nakamura, Obata, Nojima, Hashimoto, Noguchi, Ogawa and Yohda. 2018 Nakamura, Obata, Nojima, Hashimoto, Noguchi, Ogawa and Yohda</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c462t-99d16952868357ab5609bd3ba0f9f955e37095882b41552ecd66f5f76a76af133</citedby><cites>FETCH-LOGICAL-c462t-99d16952868357ab5609bd3ba0f9f955e37095882b41552ecd66f5f76a76af133</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6095959/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6095959/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,724,777,781,882,27905,27906,53772,53774</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/30147676$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Nakamura, Ryuki</creatorcontrib><creatorcontrib>Obata, Tomohiro</creatorcontrib><creatorcontrib>Nojima, Ryota</creatorcontrib><creatorcontrib>Hashimoto, Yohey</creatorcontrib><creatorcontrib>Noguchi, Keiichi</creatorcontrib><creatorcontrib>Ogawa, Takahiro</creatorcontrib><creatorcontrib>Yohda, Masafumi</creatorcontrib><title>Functional Expression and Characterization of Tetrachloroethene Dehalogenase From Geobacter sp</title><title>Frontiers in microbiology</title><addtitle>Front Microbiol</addtitle><description>Reductive dehalogenase (RDase) consists of two parts, RdhA and RdhB. RdhA is the catalytic subunit, harboring a cobalamin cofactor and two Fe-S clusters. RdhA is anchored to the cytoplasmic membrane via the membrane anchoring subunit, RdhB. There are many genes encoding RDases in the genome of organohalide-respiring bacteria, including
spp. However, most genes have not been functionally characterized. Biochemical studies on RDases have been hampered by difficulties encountered in their expression and purification. In this study, we have expressed, purified and characterized RdhA of RDase for tetrachloroethene (PceA) from
sp. PceA was expressed as a fusion protein with a trigger factor tag in
. PceA was purified and denatured in aerobic condition. Subsequently, this protein was refolded in the presence of FeCl
, Na
S and cobalamin in anaerobic condition. The reconstituted PceA exhibited dechlorination ability for tetrachloroethene. UV-Vis spectroscopy has shown that it contains cobalamin and Fe-S clusters. Since this method requires anaerobic manipulation only in the reconstituting process and has a relatively high yield, it will enable further biochemical studies of RDases.</description><subject>cobalamin</subject><subject>Geobacter</subject><subject>Microbiology</subject><subject>reconstitution</subject><subject>reductive dehalogenase</subject><subject>tetrachloroethene</subject><issn>1664-302X</issn><issn>1664-302X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><sourceid>DOA</sourceid><recordid>eNpVkUtvGyEUhVHUqonS7LuKWHZjlzfDplLlxmmkSN2kUldFDFw8E80MLoyrJr--2E6jBBCPyz0fFx2EPlCy5Lwxn-LY-3bJCG2WhGotTtAZVUosOGE_37zYn6KLUu5JbYKwOr9Dp5xQoZVWZ-jXejf5uU-TG_DV322GUuoBuyngVeey8zPk_tHtM3CK-A7mGuuGlBPMHUyAv0LnhrSByRXA65xGfA2pPehw2b5Hb6MbClw8refox_rqbvVtcfv9-mb15XbhhWLzwphAlZGsUQ2X2rVSEdMG3joSTTRSAtfEyKZhraBSMvBBqSijVq6OSDk_RzdHbkju3m5zP7r8YJPr7SGQ8sa6PPd-AEtppEQrEbUIggVjCA0umFZTFbTzobI-H1nbXTtC8DDVPw-voK9vpr6zm_TH1qJl7RXw8QmQ0-8dlNmOffEwDG6CtCuWESMEo4zqmkqOqT6nUjLE52cosXuX7cFlu3fZHlyuksuX5T0L_nvK_wFIi6Ud</recordid><startdate>20180810</startdate><enddate>20180810</enddate><creator>Nakamura, Ryuki</creator><creator>Obata, Tomohiro</creator><creator>Nojima, Ryota</creator><creator>Hashimoto, Yohey</creator><creator>Noguchi, Keiichi</creator><creator>Ogawa, Takahiro</creator><creator>Yohda, Masafumi</creator><general>Frontiers Media S.A</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20180810</creationdate><title>Functional Expression and Characterization of Tetrachloroethene Dehalogenase From Geobacter sp</title><author>Nakamura, Ryuki ; Obata, Tomohiro ; Nojima, Ryota ; Hashimoto, Yohey ; Noguchi, Keiichi ; Ogawa, Takahiro ; Yohda, Masafumi</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c462t-99d16952868357ab5609bd3ba0f9f955e37095882b41552ecd66f5f76a76af133</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>cobalamin</topic><topic>Geobacter</topic><topic>Microbiology</topic><topic>reconstitution</topic><topic>reductive dehalogenase</topic><topic>tetrachloroethene</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Nakamura, Ryuki</creatorcontrib><creatorcontrib>Obata, Tomohiro</creatorcontrib><creatorcontrib>Nojima, Ryota</creatorcontrib><creatorcontrib>Hashimoto, Yohey</creatorcontrib><creatorcontrib>Noguchi, Keiichi</creatorcontrib><creatorcontrib>Ogawa, Takahiro</creatorcontrib><creatorcontrib>Yohda, Masafumi</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>Directory of Open Access Journals</collection><jtitle>Frontiers in microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Nakamura, Ryuki</au><au>Obata, Tomohiro</au><au>Nojima, Ryota</au><au>Hashimoto, Yohey</au><au>Noguchi, Keiichi</au><au>Ogawa, Takahiro</au><au>Yohda, Masafumi</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Functional Expression and Characterization of Tetrachloroethene Dehalogenase From Geobacter sp</atitle><jtitle>Frontiers in microbiology</jtitle><addtitle>Front Microbiol</addtitle><date>2018-08-10</date><risdate>2018</risdate><volume>9</volume><spage>1774</spage><epage>1774</epage><pages>1774-1774</pages><issn>1664-302X</issn><eissn>1664-302X</eissn><abstract>Reductive dehalogenase (RDase) consists of two parts, RdhA and RdhB. RdhA is the catalytic subunit, harboring a cobalamin cofactor and two Fe-S clusters. RdhA is anchored to the cytoplasmic membrane via the membrane anchoring subunit, RdhB. There are many genes encoding RDases in the genome of organohalide-respiring bacteria, including
spp. However, most genes have not been functionally characterized. Biochemical studies on RDases have been hampered by difficulties encountered in their expression and purification. In this study, we have expressed, purified and characterized RdhA of RDase for tetrachloroethene (PceA) from
sp. PceA was expressed as a fusion protein with a trigger factor tag in
. PceA was purified and denatured in aerobic condition. Subsequently, this protein was refolded in the presence of FeCl
, Na
S and cobalamin in anaerobic condition. The reconstituted PceA exhibited dechlorination ability for tetrachloroethene. UV-Vis spectroscopy has shown that it contains cobalamin and Fe-S clusters. Since this method requires anaerobic manipulation only in the reconstituting process and has a relatively high yield, it will enable further biochemical studies of RDases.</abstract><cop>Switzerland</cop><pub>Frontiers Media S.A</pub><pmid>30147676</pmid><doi>10.3389/fmicb.2018.01774</doi><tpages>1</tpages><oa>free_for_read</oa></addata></record> |
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title | Functional Expression and Characterization of Tetrachloroethene Dehalogenase From Geobacter sp |
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