Integration of Repeatomic and Cytogenetic Data on Satellite DNA for the Genome Analysis in the Genus Salvia (Lamiaceae)

Within the complicated and controversial taxonomy of cosmopolitan genus Salvia L. (Lamiaceae) are valuable species Salvia officinalis L. and Salvia sclarea L., which are important for the pharmaceutical, ornamental horticulture, food, and perfume industries. Genome organization and chromosome struct...

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Published in:Plants (Basel) 2022-08, Vol.11 (17), p.2244
Main Authors: Muravenko, Olga V., Yurkevich, Olga Yu, Kalnyuk, Julia V., Samatadze, Tatiana E., Zoshchuk, Svyatoslav A., Amosova, Alexandra V.
Format: Article
Language:English
Subjects:
45S rDNA
5S rDNA
Chromosomes
Comparative analysis
Cytogenetics
Deoxyribonucleic acid
DNA
Essential oils
Flowers & plants
Food industry
Gene mapping
Genomes
high throughput sequencing
Homology
Horticulture
Karyotypes
Lamiaceae
Localization
Morphology
Oils & fats
Phylogenetics
Phylogeny
Pipelines
repeatome
Ribosomal DNA
Salvia
Salvia sclarea
Satellite DNA
Satellites
Species
Taxonomy
transposable elements
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description Within the complicated and controversial taxonomy of cosmopolitan genus Salvia L. (Lamiaceae) are valuable species Salvia officinalis L. and Salvia sclarea L., which are important for the pharmaceutical, ornamental horticulture, food, and perfume industries. Genome organization and chromosome structure of these essential oil species remain insufficiently studied. For the first time, the comparative repeatome analysis of S. officinalis and S. sclarea was performed using the obtained NGS data, RepeatExplorer/TAREAN pipelines and FISH-based chromosome mapping of the revealed satellite DNA families (satDNAs). In repeatomes of these species, LTR retrotransposons made up the majority of their repetitive DNA. Interspecific variations in genome abundance of Class I and Class II transposable elements, ribosomal DNA, and satellite DNA were revealed. Four (S. sclarea) and twelve (S. officinalis) putative satDNAs were identified. Based on patterns of chromosomal distribution of 45S rDNA; 5S rDNA and the revealed satDNAs, karyograms of S. officinalis and S. sclarea were constructed. Promising satDNAs which can be further used as chromosome markers to assess inter- and intraspecific chromosome variability in Salvia karyotypes were determined. The specific localization of homologous satDNA and 45S rDNA on chromosomes of the studied Salvia species confirmed their common origin, which is consistent with previously reported molecular phylogenetic data.
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subjects 45S rDNA
5S rDNA
Chromosomes
Comparative analysis
Cytogenetics
Deoxyribonucleic acid
DNA
Essential oils
Flowers & plants
Food industry
Gene mapping
Genomes
high throughput sequencing
Homology
Horticulture
Karyotypes
Lamiaceae
Localization
Morphology
Oils & fats
Phylogenetics
Phylogeny
Pipelines
repeatome
Ribosomal DNA
Salvia
Salvia sclarea
Satellite DNA
Satellites
Species
Taxonomy
transposable elements
title Integration of Repeatomic and Cytogenetic Data on Satellite DNA for the Genome Analysis in the Genus Salvia (Lamiaceae)
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