Residues R1075, D1090, R1095, and C1130 Are Critical in ADAMTS13 TSP8-Spacer Interaction Predicted by Molecular Dynamics Simulation

• Published in: Molecules (Basel, Switzerland) Switzerland), 2021-12, Vol.26 (24), p.7525
• Main Authors: Wu, Zhiwei, Yang, Junxian, Xie, Xubin, Liu, Guangjian, Fang, Ying, Wu, Jianhua, Lin, Jiangguo
• Format: Article
• Language: English
• Subjects: ADAMTS13; ADAMTS13 Protein - chemistry; ADAMTS13 Protein - metabolism; Antibodies; auto-inhibition; Autoantibodies; Binding sites; Conformation; Crystal structure; Domains; Equilibrium; Homology; Humans; Hydrogen bonding; Hydrogen bonds; Metalloproteinase; Microvasculature; Molecular docking; Molecular dynamics; Molecular Dynamics Simulation; Mutation; Normal distribution; Protein Binding; Protein Domains; Proteolysis; Residues; Simulation; Spacer; Thrombocytopenic purpura; Thrombospondin; Thrombotic thrombocytopenic purpura; Von Willebrand factor; VWF
• ISSN: 1420-3049; 1420-3049
• DOI: 10.3390/molecules26247525

ADAMTS13 (A Disintegrin and Metalloprotease with Thrombospondin type 1 repeats, member 13) cleaves von Willebrand Factor (VWF) multimers to limit the prothrombotic function of VWF. The deficiency of ADAMTS13 causes a lethal thrombotic microvascular disease, thrombotic thrombocytopenic purpura (TTP). ADAMTS13 circulates in a "closed" conformation with the distal domain associating the Spacer domain to avoid off-target proteolysis or recognition by auto-antibodies. However, the interactions of the distal TSP8 domain and the Spacer domain remain elusive. Here, we constructed the TSP8-Spacer complex by a combination of homology modelling and flexible docking. Molecular dynamics simulation was applied to map the binding sites on the TSP8 or Spacer domain. The results predicted that R1075, D1090, R1095, and C1130 on the TSP8 domain were key residues that interacted with the Spacer domain. R1075 and R1095 bound exosite-4 tightly, D1090 formed multiple hydrogen bonds and salt bridges with exosite-3, and C1130 interacted with both exosite-3 and exosite-4. Specific mutations of exosite-3 (R568K/F592Y/R660K/Y661F/Y665F) or the four key residues (R1075A/D1090A/R1095A/C1130A) impaired the binding of the TSP8 domain to the Spacer domain. These results shed new light on the understanding of the auto-inhibition of ADAMTS13.