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Butyrophilin-like 9 expression is associated with outcome in lung adenocarcinoma
Background Lung adenocarcinoma (LUAD) is the most prevalent non-small cell lung cancer (NSCLC). Patients with LUAD have a poor 5-year survival rate. The use of immune checkpoint inhibitors (ICIs) for the treatment of LUAD has been on the rise in the past decade. This study explored the prognostic ro...
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Published in: | BMC cancer 2021-10, Vol.21 (1), p.1-1096, Article 1096 |
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description | Background Lung adenocarcinoma (LUAD) is the most prevalent non-small cell lung cancer (NSCLC). Patients with LUAD have a poor 5-year survival rate. The use of immune checkpoint inhibitors (ICIs) for the treatment of LUAD has been on the rise in the past decade. This study explored the prognostic role of butyrophilin-like 9 (BTNL9) in LUAD. Methods Gene expression profile of buytrophilins (BTNs) was determined using the GEPIA database. The effect of BTNL9 on the survival of LUAD patients was assessed using Kaplan-Meier plotter and OncoLnc. Correlation between BTNL9 expression and tumor-infiltrating immune cells (TILs) was explored using TIMER and GEPIA databases. Further, the relationship between BTNL9 expression and drug response was evaluated using CARE. Besides, construction and evaluation of nomogram based on BTNL9 expression and TNM stage. Results BTNL9 expression was downregulated in LUAD and was associated with a poor probability of 1, 3, 5-years overall survival (OS). In addition, BTNL9 expression was regulated at epigenetic and post-transcriptional modification levels. Moreover, BTNL9 expression was significantly positively correlated with ImmuneScore and ESTIMATEScore. Furthermore, BTNL9 expression was positively associated with infiltration levels of B cells, CD4.sup.+ T cells, and macrophages. Kaplan-Meier analysis showed that BTNL9 expression in B cells and dendritic cells (DCs) was significantly associated with OS. BTNL9 expression was significantly positively correlated with CARE scores. Conclusions These findings show that BTNL9 is a potential prognostic biomarker for LUAD. Low BTNL9 expression levels associated with low infiltration levels of naïve B cells, and DCs in the tumor microenvironment are unfavorable for OS in LUAD patients. Keywords: Butyrophilin-like 9, B cells, Dendritic cells, Prognosis, Lung adenocarcinoma |
doi_str_mv | 10.1186/s12885-021-08790-9 |
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Patients with LUAD have a poor 5-year survival rate. The use of immune checkpoint inhibitors (ICIs) for the treatment of LUAD has been on the rise in the past decade. This study explored the prognostic role of butyrophilin-like 9 (BTNL9) in LUAD. Methods Gene expression profile of buytrophilins (BTNs) was determined using the GEPIA database. The effect of BTNL9 on the survival of LUAD patients was assessed using Kaplan-Meier plotter and OncoLnc. Correlation between BTNL9 expression and tumor-infiltrating immune cells (TILs) was explored using TIMER and GEPIA databases. Further, the relationship between BTNL9 expression and drug response was evaluated using CARE. Besides, construction and evaluation of nomogram based on BTNL9 expression and TNM stage. Results BTNL9 expression was downregulated in LUAD and was associated with a poor probability of 1, 3, 5-years overall survival (OS). In addition, BTNL9 expression was regulated at epigenetic and post-transcriptional modification levels. Moreover, BTNL9 expression was significantly positively correlated with ImmuneScore and ESTIMATEScore. Furthermore, BTNL9 expression was positively associated with infiltration levels of B cells, CD4.sup.+ T cells, and macrophages. Kaplan-Meier analysis showed that BTNL9 expression in B cells and dendritic cells (DCs) was significantly associated with OS. BTNL9 expression was significantly positively correlated with CARE scores. Conclusions These findings show that BTNL9 is a potential prognostic biomarker for LUAD. Low BTNL9 expression levels associated with low infiltration levels of naïve B cells, and DCs in the tumor microenvironment are unfavorable for OS in LUAD patients. Keywords: Butyrophilin-like 9, B cells, Dendritic cells, Prognosis, Lung adenocarcinoma</description><identifier>ISSN: 1471-2407</identifier><identifier>EISSN: 1471-2407</identifier><identifier>DOI: 10.1186/s12885-021-08790-9</identifier><identifier>PMID: 34635082</identifier><language>eng</language><publisher>London: BioMed Central Ltd</publisher><subject>Adenocarcinoma ; Analysis ; B cells ; Butyrophilin ; Butyrophilin-like 9 ; CD4 antigen ; Correlation analysis ; Datasets ; Dendritic cells ; Epigenetics ; Esophagus ; Gene expression ; Genetic aspects ; Immune checkpoint inhibitors ; Immunotherapy ; Infiltration ; Lung adenocarcinoma ; Lung cancer ; Lung cancer, Non-small cell ; Lymphocytes B ; Lymphocytes T ; Macrophages ; Medical prognosis ; Metastases ; Mutation ; Nomograms ; Non-small cell lung carcinoma ; Patient outcomes ; Patients ; Post-transcription ; Prognosis ; Small cell lung carcinoma ; Survival analysis ; Tumor microenvironment ; Tumor-infiltrating lymphocytes</subject><ispartof>BMC cancer, 2021-10, Vol.21 (1), p.1-1096, Article 1096</ispartof><rights>COPYRIGHT 2021 BioMed Central Ltd.</rights><rights>2021. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>The Author(s) 2021</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c605t-51c4e30fbb94df55325755cc9bd38ca0bc3bb4686488b8b9e7053cbf625db79a3</citedby><cites>FETCH-LOGICAL-c605t-51c4e30fbb94df55325755cc9bd38ca0bc3bb4686488b8b9e7053cbf625db79a3</cites><orcidid>0000-0002-7466-5289</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8507344/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/2583115602?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,25753,27924,27925,37012,37013,44590,53791,53793</link.rule.ids></links><search><creatorcontrib>Ma, Weishuang</creatorcontrib><creatorcontrib>Liang, Jiaming</creatorcontrib><creatorcontrib>Mo, Junjian</creatorcontrib><creatorcontrib>Zhang, Siyuan</creatorcontrib><creatorcontrib>Hu, Ningdong</creatorcontrib><creatorcontrib>Tian, Dongbo</creatorcontrib><creatorcontrib>Chen, Zisheng</creatorcontrib><title>Butyrophilin-like 9 expression is associated with outcome in lung adenocarcinoma</title><title>BMC cancer</title><description>Background Lung adenocarcinoma (LUAD) is the most prevalent non-small cell lung cancer (NSCLC). Patients with LUAD have a poor 5-year survival rate. The use of immune checkpoint inhibitors (ICIs) for the treatment of LUAD has been on the rise in the past decade. This study explored the prognostic role of butyrophilin-like 9 (BTNL9) in LUAD. Methods Gene expression profile of buytrophilins (BTNs) was determined using the GEPIA database. The effect of BTNL9 on the survival of LUAD patients was assessed using Kaplan-Meier plotter and OncoLnc. Correlation between BTNL9 expression and tumor-infiltrating immune cells (TILs) was explored using TIMER and GEPIA databases. Further, the relationship between BTNL9 expression and drug response was evaluated using CARE. Besides, construction and evaluation of nomogram based on BTNL9 expression and TNM stage. Results BTNL9 expression was downregulated in LUAD and was associated with a poor probability of 1, 3, 5-years overall survival (OS). In addition, BTNL9 expression was regulated at epigenetic and post-transcriptional modification levels. Moreover, BTNL9 expression was significantly positively correlated with ImmuneScore and ESTIMATEScore. Furthermore, BTNL9 expression was positively associated with infiltration levels of B cells, CD4.sup.+ T cells, and macrophages. Kaplan-Meier analysis showed that BTNL9 expression in B cells and dendritic cells (DCs) was significantly associated with OS. BTNL9 expression was significantly positively correlated with CARE scores. Conclusions These findings show that BTNL9 is a potential prognostic biomarker for LUAD. Low BTNL9 expression levels associated with low infiltration levels of naïve B cells, and DCs in the tumor microenvironment are unfavorable for OS in LUAD patients. Keywords: Butyrophilin-like 9, B cells, Dendritic cells, Prognosis, Lung adenocarcinoma</description><subject>Adenocarcinoma</subject><subject>Analysis</subject><subject>B cells</subject><subject>Butyrophilin</subject><subject>Butyrophilin-like 9</subject><subject>CD4 antigen</subject><subject>Correlation analysis</subject><subject>Datasets</subject><subject>Dendritic cells</subject><subject>Epigenetics</subject><subject>Esophagus</subject><subject>Gene expression</subject><subject>Genetic aspects</subject><subject>Immune checkpoint inhibitors</subject><subject>Immunotherapy</subject><subject>Infiltration</subject><subject>Lung adenocarcinoma</subject><subject>Lung cancer</subject><subject>Lung cancer, Non-small cell</subject><subject>Lymphocytes B</subject><subject>Lymphocytes T</subject><subject>Macrophages</subject><subject>Medical prognosis</subject><subject>Metastases</subject><subject>Mutation</subject><subject>Nomograms</subject><subject>Non-small cell lung carcinoma</subject><subject>Patient outcomes</subject><subject>Patients</subject><subject>Post-transcription</subject><subject>Prognosis</subject><subject>Small cell lung carcinoma</subject><subject>Survival analysis</subject><subject>Tumor microenvironment</subject><subject>Tumor-infiltrating lymphocytes</subject><issn>1471-2407</issn><issn>1471-2407</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><sourceid>DOA</sourceid><recordid>eNptkt1r1TAYh4sobk7_Aa8KguhFZz7b5EaYY-qBgeLHdchX2xzb5JikbvvvzdkZuorkIuHNkyfkza-qnkNwCiFr3ySIGKMNQLABrOOg4Q-qY0g62CACuof31kfVk5S2AMCOAfa4OsKkxRQwdFx9frfkmxh2o5ucbyb3w9a8tte7aFNywdcu1TKloJ3M1tRXLo91WLIOs62dr6fFD7U01gcto3Y-zPJp9aiXU7LP7uaT6vv7i2_nH5vLTx8252eXjW4BzQ2FmlgMeqU4MT2lGNGOUq25MphpCZTGSpGWtYQxxRS3HaBYq75F1KiOS3xSbQ5eE-RW7KKbZbwRQTpxWwhxEDJmpycrEOYcYYg1sIpQTZgxjCpMUM8lMAQU19uDa7eo2RptfY5yWknXO96NYgi_BKOgw4QUwas7QQw_F5uymF3Sdpqkt2FJAlG2_yvQ8YK--AfdhiX60qo9hSGkLUB_qUGWBzjfh3Kv3kvFWctgi1jb4UKd_ocqw9jZ6eBt70p9deD16kBhsr3Og1xSEpuvX9bsy3vsaOWUxxSmJZdYpDWIDqCOIaVo-z-Ng0DsgyoOQRUlqOI2qILj3z1c1wk</recordid><startdate>20211011</startdate><enddate>20211011</enddate><creator>Ma, Weishuang</creator><creator>Liang, Jiaming</creator><creator>Mo, Junjian</creator><creator>Zhang, Siyuan</creator><creator>Hu, Ningdong</creator><creator>Tian, Dongbo</creator><creator>Chen, Zisheng</creator><general>BioMed Central Ltd</general><general>BioMed Central</general><general>BMC</general><scope>AAYXX</scope><scope>CITATION</scope><scope>ISR</scope><scope>3V.</scope><scope>7TO</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>H94</scope><scope>K9.</scope><scope>M0S</scope><scope>M1P</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope><orcidid>https://orcid.org/0000-0002-7466-5289</orcidid></search><sort><creationdate>20211011</creationdate><title>Butyrophilin-like 9 expression is associated with outcome in lung adenocarcinoma</title><author>Ma, Weishuang ; Liang, Jiaming ; Mo, Junjian ; Zhang, Siyuan ; Hu, Ningdong ; Tian, Dongbo ; Chen, Zisheng</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c605t-51c4e30fbb94df55325755cc9bd38ca0bc3bb4686488b8b9e7053cbf625db79a3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Adenocarcinoma</topic><topic>Analysis</topic><topic>B cells</topic><topic>Butyrophilin</topic><topic>Butyrophilin-like 9</topic><topic>CD4 antigen</topic><topic>Correlation analysis</topic><topic>Datasets</topic><topic>Dendritic cells</topic><topic>Epigenetics</topic><topic>Esophagus</topic><topic>Gene expression</topic><topic>Genetic aspects</topic><topic>Immune checkpoint inhibitors</topic><topic>Immunotherapy</topic><topic>Infiltration</topic><topic>Lung adenocarcinoma</topic><topic>Lung cancer</topic><topic>Lung cancer, Non-small cell</topic><topic>Lymphocytes B</topic><topic>Lymphocytes T</topic><topic>Macrophages</topic><topic>Medical prognosis</topic><topic>Metastases</topic><topic>Mutation</topic><topic>Nomograms</topic><topic>Non-small cell lung carcinoma</topic><topic>Patient outcomes</topic><topic>Patients</topic><topic>Post-transcription</topic><topic>Prognosis</topic><topic>Small cell lung carcinoma</topic><topic>Survival analysis</topic><topic>Tumor microenvironment</topic><topic>Tumor-infiltrating lymphocytes</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ma, Weishuang</creatorcontrib><creatorcontrib>Liang, Jiaming</creatorcontrib><creatorcontrib>Mo, Junjian</creatorcontrib><creatorcontrib>Zhang, Siyuan</creatorcontrib><creatorcontrib>Hu, Ningdong</creatorcontrib><creatorcontrib>Tian, Dongbo</creatorcontrib><creatorcontrib>Chen, Zisheng</creatorcontrib><collection>CrossRef</collection><collection>Gale In Context: Science</collection><collection>ProQuest Central (Corporate)</collection><collection>Oncogenes and Growth Factors Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Publicly Available Content Database (Proquest) (PQ_SDU_P3)</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>BMC cancer</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ma, Weishuang</au><au>Liang, Jiaming</au><au>Mo, Junjian</au><au>Zhang, Siyuan</au><au>Hu, Ningdong</au><au>Tian, Dongbo</au><au>Chen, Zisheng</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Butyrophilin-like 9 expression is associated with outcome in lung adenocarcinoma</atitle><jtitle>BMC cancer</jtitle><date>2021-10-11</date><risdate>2021</risdate><volume>21</volume><issue>1</issue><spage>1</spage><epage>1096</epage><pages>1-1096</pages><artnum>1096</artnum><issn>1471-2407</issn><eissn>1471-2407</eissn><abstract>Background Lung adenocarcinoma (LUAD) is the most prevalent non-small cell lung cancer (NSCLC). Patients with LUAD have a poor 5-year survival rate. The use of immune checkpoint inhibitors (ICIs) for the treatment of LUAD has been on the rise in the past decade. This study explored the prognostic role of butyrophilin-like 9 (BTNL9) in LUAD. Methods Gene expression profile of buytrophilins (BTNs) was determined using the GEPIA database. The effect of BTNL9 on the survival of LUAD patients was assessed using Kaplan-Meier plotter and OncoLnc. Correlation between BTNL9 expression and tumor-infiltrating immune cells (TILs) was explored using TIMER and GEPIA databases. Further, the relationship between BTNL9 expression and drug response was evaluated using CARE. Besides, construction and evaluation of nomogram based on BTNL9 expression and TNM stage. Results BTNL9 expression was downregulated in LUAD and was associated with a poor probability of 1, 3, 5-years overall survival (OS). In addition, BTNL9 expression was regulated at epigenetic and post-transcriptional modification levels. Moreover, BTNL9 expression was significantly positively correlated with ImmuneScore and ESTIMATEScore. Furthermore, BTNL9 expression was positively associated with infiltration levels of B cells, CD4.sup.+ T cells, and macrophages. Kaplan-Meier analysis showed that BTNL9 expression in B cells and dendritic cells (DCs) was significantly associated with OS. BTNL9 expression was significantly positively correlated with CARE scores. Conclusions These findings show that BTNL9 is a potential prognostic biomarker for LUAD. Low BTNL9 expression levels associated with low infiltration levels of naïve B cells, and DCs in the tumor microenvironment are unfavorable for OS in LUAD patients. Keywords: Butyrophilin-like 9, B cells, Dendritic cells, Prognosis, Lung adenocarcinoma</abstract><cop>London</cop><pub>BioMed Central Ltd</pub><pmid>34635082</pmid><doi>10.1186/s12885-021-08790-9</doi><orcidid>https://orcid.org/0000-0002-7466-5289</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Adenocarcinoma Analysis B cells Butyrophilin Butyrophilin-like 9 CD4 antigen Correlation analysis Datasets Dendritic cells Epigenetics Esophagus Gene expression Genetic aspects Immune checkpoint inhibitors Immunotherapy Infiltration Lung adenocarcinoma Lung cancer Lung cancer, Non-small cell Lymphocytes B Lymphocytes T Macrophages Medical prognosis Metastases Mutation Nomograms Non-small cell lung carcinoma Patient outcomes Patients Post-transcription Prognosis Small cell lung carcinoma Survival analysis Tumor microenvironment Tumor-infiltrating lymphocytes |
title | Butyrophilin-like 9 expression is associated with outcome in lung adenocarcinoma |
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