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Comparative transcriptome of normal and cancer-associated fibroblasts

The characteristics of a tumor are largely determined by its interaction with the surrounding micro-environment (TME). TME consists of both cellular and non-cellular components. Cancer-associated fibroblasts (CAFs) are a major component of the TME. They are a source of many secreted factors that inf...

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Published in:BMC cancer 2024-10, Vol.24 (1), p.1231-31, Article 1231
Main Authors: Abikar, Apoorva, Mustafa, Mohammad Mehaboob Subhani, Athalye, Radhika Rajiv, Nadig, Namratha, Tamboli, Ninad, Babu, Vinod, Keshavamurthy, Ramaiah, Ranganathan, Prathibha
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Mustafa, Mohammad Mehaboob Subhani
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Ranganathan, Prathibha
description The characteristics of a tumor are largely determined by its interaction with the surrounding micro-environment (TME). TME consists of both cellular and non-cellular components. Cancer-associated fibroblasts (CAFs) are a major component of the TME. They are a source of many secreted factors that influence the survival and progression of tumors as well as their response to drugs. Identification of markers either overexpressed in CAFs or unique to CAFs would pave the way for novel therapeutic strategies that in combination with conventional chemotherapy are likely to have better patient outcome. Fibroblasts have been derived from Benign Prostatic Hyperplasia (BPH) and prostate cancer. RNA from these has been used to perform a transcriptome analysis in order to get a comparative profile of normal and cancer-associated fibroblasts. The study has identified 818 differentially expressed mRNAs and 17 lincRNAs between normal and cancer-associated fibroblasts. Also, 15 potential lincRNA-miRNA-mRNA combinations have been identified which may be potential biomarkers. This study identified differentially expressed markers between normal and cancer-associated fibroblasts that would help in targeted therapy against CAFs/derived factors, in combination with conventional therapy. However, this would in future need more experimental validation.
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subjects Analysis
Biological markers
Biomarkers, Tumor - genetics
Biomarkers, Tumor - metabolism
Cancer
Cancer therapies
Cancer-associated fibroblasts
Cancer-Associated Fibroblasts - metabolism
Cancer-Associated Fibroblasts - pathology
Care and treatment
Chemoresistance
Chemotherapy
Complications and side effects
Cytokines
Drug resistance
Extracellular matrix
Fibroblasts
Fibroblasts - metabolism
Gene Expression Profiling
Gene Expression Regulation, Neoplastic
Genomes
Growth factors
Health aspects
Humans
Hyperplasia
Kinases
LINCRNA
Male
Metabolism
Metabolites
Metastasis
MicroRNAs
MicroRNAs - genetics
miRNA
Non-coding RNA
Patient outcomes
Prostate
Prostate cancer
Prostatic Hyperplasia - genetics
Prostatic Hyperplasia - metabolism
Prostatic Hyperplasia - pathology
Prostatic Neoplasms - genetics
Prostatic Neoplasms - metabolism
Prostatic Neoplasms - pathology
RNA, Long Noncoding - genetics
RNA, Messenger - genetics
RNA, Messenger - metabolism
Transcriptome
Transcriptomes
Tumor microenvironment
Tumor Microenvironment - genetics
Urology
title Comparative transcriptome of normal and cancer-associated fibroblasts
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