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Genomic Analysis of Mic1 Reveals a Novel Freshwater Long-Tailed Cyanophage
Lake Chaohu, one of the five largest freshwater lakes in China, has been suffering from severe cyanobacterial blooms in the summer for many years. Cyanophages, the viruses that specifically infect cyanobacteria, play a key role in modulating cyanobacterial population, and thus regulate the emergence...
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Published in: | Frontiers in microbiology 2020-04, Vol.11, p.484-484 |
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creator | Yang, Feng Jin, Hua Wang, Xiao-Qian Li, Qiong Zhang, Jun-Tao Cui, Ning Jiang, Yong-Liang Chen, Yuxing Wu, Qing-Fa Zhou, Cong-Zhao Li, Wei-Fang |
description | Lake Chaohu, one of the five largest freshwater lakes in China, has been suffering from severe cyanobacterial blooms in the summer for many years. Cyanophages, the viruses that specifically infect cyanobacteria, play a key role in modulating cyanobacterial population, and thus regulate the emergence and decline of cyanobacterial blooms. Here we report a long-tailed cyanophage isolated from Lake Chaohu, termed Mic1, which specifically infects the cyanobacterium
. Mic1 has an icosahedral head of 88 nm in diameter and a long flexible tail of 400 nm. It possesses a circular genome of 92,627 bp, which contains 98 putative open reading frames. Genome sequence analysis enabled us to define a novel terminase large subunit that consists of two types of intein, indicating that the genome packaging of Mic1 is under fine control via posttranslational maturation of the terminase. Moreover, phylogenetic analysis suggested Mic1 and mitochondria share a common evolutionary origin of DNA polymerase γ gene. All together, these findings provided a start-point for investigating the co-evolution of cyanophages and its cyanobacterial hosts. |
doi_str_mv | 10.3389/fmicb.2020.00484 |
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. Mic1 has an icosahedral head of 88 nm in diameter and a long flexible tail of 400 nm. It possesses a circular genome of 92,627 bp, which contains 98 putative open reading frames. Genome sequence analysis enabled us to define a novel terminase large subunit that consists of two types of intein, indicating that the genome packaging of Mic1 is under fine control via posttranslational maturation of the terminase. Moreover, phylogenetic analysis suggested Mic1 and mitochondria share a common evolutionary origin of DNA polymerase γ gene. All together, these findings provided a start-point for investigating the co-evolution of cyanophages and its cyanobacterial hosts.</description><identifier>ISSN: 1664-302X</identifier><identifier>EISSN: 1664-302X</identifier><identifier>DOI: 10.3389/fmicb.2020.00484</identifier><identifier>PMID: 32322241</identifier><language>eng</language><publisher>Switzerland: Frontiers Media S.A</publisher><subject>DNA polymerase γ ; evolution ; freshwater cyanosiphophage ; genome sequence ; Lake Chaohu ; Microbiology ; terminase large subunit</subject><ispartof>Frontiers in microbiology, 2020-04, Vol.11, p.484-484</ispartof><rights>Copyright © 2020 Yang, Jin, Wang, Li, Zhang, Cui, Jiang, Chen, Wu, Zhou and Li.</rights><rights>Copyright © 2020 Yang, Jin, Wang, Li, Zhang, Cui, Jiang, Chen, Wu, Zhou and Li. 2020 Yang, Jin, Wang, Li, Zhang, Cui, Jiang, Chen, Wu, Zhou and Li</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c458t-46d0cb83845ac84c5b37260a72808e1ef3c12f8e634260a6b9b9a3b8256c5a993</citedby><cites>FETCH-LOGICAL-c458t-46d0cb83845ac84c5b37260a72808e1ef3c12f8e634260a6b9b9a3b8256c5a993</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7156551/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7156551/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,724,777,781,882,27905,27906,53772,53774</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32322241$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Yang, Feng</creatorcontrib><creatorcontrib>Jin, Hua</creatorcontrib><creatorcontrib>Wang, Xiao-Qian</creatorcontrib><creatorcontrib>Li, Qiong</creatorcontrib><creatorcontrib>Zhang, Jun-Tao</creatorcontrib><creatorcontrib>Cui, Ning</creatorcontrib><creatorcontrib>Jiang, Yong-Liang</creatorcontrib><creatorcontrib>Chen, Yuxing</creatorcontrib><creatorcontrib>Wu, Qing-Fa</creatorcontrib><creatorcontrib>Zhou, Cong-Zhao</creatorcontrib><creatorcontrib>Li, Wei-Fang</creatorcontrib><title>Genomic Analysis of Mic1 Reveals a Novel Freshwater Long-Tailed Cyanophage</title><title>Frontiers in microbiology</title><addtitle>Front Microbiol</addtitle><description>Lake Chaohu, one of the five largest freshwater lakes in China, has been suffering from severe cyanobacterial blooms in the summer for many years. Cyanophages, the viruses that specifically infect cyanobacteria, play a key role in modulating cyanobacterial population, and thus regulate the emergence and decline of cyanobacterial blooms. Here we report a long-tailed cyanophage isolated from Lake Chaohu, termed Mic1, which specifically infects the cyanobacterium
. Mic1 has an icosahedral head of 88 nm in diameter and a long flexible tail of 400 nm. It possesses a circular genome of 92,627 bp, which contains 98 putative open reading frames. Genome sequence analysis enabled us to define a novel terminase large subunit that consists of two types of intein, indicating that the genome packaging of Mic1 is under fine control via posttranslational maturation of the terminase. Moreover, phylogenetic analysis suggested Mic1 and mitochondria share a common evolutionary origin of DNA polymerase γ gene. All together, these findings provided a start-point for investigating the co-evolution of cyanophages and its cyanobacterial hosts.</description><subject>DNA polymerase γ</subject><subject>evolution</subject><subject>freshwater cyanosiphophage</subject><subject>genome sequence</subject><subject>Lake Chaohu</subject><subject>Microbiology</subject><subject>terminase large subunit</subject><issn>1664-302X</issn><issn>1664-302X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>DOA</sourceid><recordid>eNpVkc1vEzEQxS0EolXpnRPykcsGf-7aF6QqoqUogISKxM0ae2cTV5t1sDep8t-zSUrV-mJr_N5vZvQIec_ZTEpjP3XrGPxMMMFmjCmjXpFzXteqkkz8ef3sfUYuS7ln01GTlrG35EwKKYRQ_Jx8u8EhTSB6NUC_L7HQ1NHvMXD6C3cIfaFAf6Qd9vQ6Y1k9wIiZLtKwrO4g9tjS-R6GtFnBEt-RN91kwMvH-4L8vv5yN_9aLX7e3M6vFlVQ2oyVqlsWvJFGaQhGBe1lI2oGjTDMIMdOBi46g7VUh3LtrbcgvRG6DhqslRfk9sRtE9y7TY5ryHuXILpjIeWlgzzG0KMTtvW6RVTcNgqUsKrxokGrbAdglZlYn0-szdavsQ04jBn6F9CXP0NcuWXauYbrWms-AT4-AnL6u8UyunUsAfseBkzb4oS0Sqhpk4OUnaQhp1Iydk9tOHOHRN0xUXdI1B0TnSwfno_3ZPifn_wHD56b5w</recordid><startdate>20200408</startdate><enddate>20200408</enddate><creator>Yang, Feng</creator><creator>Jin, Hua</creator><creator>Wang, Xiao-Qian</creator><creator>Li, Qiong</creator><creator>Zhang, Jun-Tao</creator><creator>Cui, Ning</creator><creator>Jiang, Yong-Liang</creator><creator>Chen, Yuxing</creator><creator>Wu, Qing-Fa</creator><creator>Zhou, Cong-Zhao</creator><creator>Li, Wei-Fang</creator><general>Frontiers Media S.A</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20200408</creationdate><title>Genomic Analysis of Mic1 Reveals a Novel Freshwater Long-Tailed Cyanophage</title><author>Yang, Feng ; Jin, Hua ; Wang, Xiao-Qian ; Li, Qiong ; Zhang, Jun-Tao ; Cui, Ning ; Jiang, Yong-Liang ; Chen, Yuxing ; Wu, Qing-Fa ; Zhou, Cong-Zhao ; Li, Wei-Fang</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c458t-46d0cb83845ac84c5b37260a72808e1ef3c12f8e634260a6b9b9a3b8256c5a993</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>DNA polymerase γ</topic><topic>evolution</topic><topic>freshwater cyanosiphophage</topic><topic>genome sequence</topic><topic>Lake Chaohu</topic><topic>Microbiology</topic><topic>terminase large subunit</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Yang, Feng</creatorcontrib><creatorcontrib>Jin, Hua</creatorcontrib><creatorcontrib>Wang, Xiao-Qian</creatorcontrib><creatorcontrib>Li, Qiong</creatorcontrib><creatorcontrib>Zhang, Jun-Tao</creatorcontrib><creatorcontrib>Cui, Ning</creatorcontrib><creatorcontrib>Jiang, Yong-Liang</creatorcontrib><creatorcontrib>Chen, Yuxing</creatorcontrib><creatorcontrib>Wu, Qing-Fa</creatorcontrib><creatorcontrib>Zhou, Cong-Zhao</creatorcontrib><creatorcontrib>Li, Wei-Fang</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Frontiers in microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Yang, Feng</au><au>Jin, Hua</au><au>Wang, Xiao-Qian</au><au>Li, Qiong</au><au>Zhang, Jun-Tao</au><au>Cui, Ning</au><au>Jiang, Yong-Liang</au><au>Chen, Yuxing</au><au>Wu, Qing-Fa</au><au>Zhou, Cong-Zhao</au><au>Li, Wei-Fang</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genomic Analysis of Mic1 Reveals a Novel Freshwater Long-Tailed Cyanophage</atitle><jtitle>Frontiers in microbiology</jtitle><addtitle>Front Microbiol</addtitle><date>2020-04-08</date><risdate>2020</risdate><volume>11</volume><spage>484</spage><epage>484</epage><pages>484-484</pages><issn>1664-302X</issn><eissn>1664-302X</eissn><abstract>Lake Chaohu, one of the five largest freshwater lakes in China, has been suffering from severe cyanobacterial blooms in the summer for many years. Cyanophages, the viruses that specifically infect cyanobacteria, play a key role in modulating cyanobacterial population, and thus regulate the emergence and decline of cyanobacterial blooms. Here we report a long-tailed cyanophage isolated from Lake Chaohu, termed Mic1, which specifically infects the cyanobacterium
. Mic1 has an icosahedral head of 88 nm in diameter and a long flexible tail of 400 nm. It possesses a circular genome of 92,627 bp, which contains 98 putative open reading frames. Genome sequence analysis enabled us to define a novel terminase large subunit that consists of two types of intein, indicating that the genome packaging of Mic1 is under fine control via posttranslational maturation of the terminase. Moreover, phylogenetic analysis suggested Mic1 and mitochondria share a common evolutionary origin of DNA polymerase γ gene. All together, these findings provided a start-point for investigating the co-evolution of cyanophages and its cyanobacterial hosts.</abstract><cop>Switzerland</cop><pub>Frontiers Media S.A</pub><pmid>32322241</pmid><doi>10.3389/fmicb.2020.00484</doi><tpages>1</tpages><oa>free_for_read</oa></addata></record> |
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subjects | DNA polymerase γ evolution freshwater cyanosiphophage genome sequence Lake Chaohu Microbiology terminase large subunit |
title | Genomic Analysis of Mic1 Reveals a Novel Freshwater Long-Tailed Cyanophage |
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