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Urinary sediment mRNA as a potent biomarker of IgA nephropathy
The quantification of mRNA expression in urinary sediments is a reliable biomarker for various diseases. However, few studies have investigated the clinical relevance of urinary mRNA levels in IgA nephropathy (IgAN). Thus, we investigated the expression of urinary mRNAs and their clinical significan...
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Published in: | BMC nephrology 2024-11, Vol.25 (1), p.401-10, Article 401 |
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description | The quantification of mRNA expression in urinary sediments is a reliable biomarker for various diseases. However, few studies have investigated the clinical relevance of urinary mRNA levels in IgA nephropathy (IgAN). Thus, we investigated the expression of urinary mRNAs and their clinical significance in IgAN.
Overall, 200 patients with biopsy-proven IgAN, 48 disease controls, and 76 healthy controls were enrolled. We identified the differential expression of mRNAs in renal tissue between patients with IgAN and normal subjects using the Gene Expression Omnibus dataset and selected candidate mRNAs. mRNA expression in the urinary sediment was measured using quantitative real-time polymerase chain reaction. Associations between urinary mRNA levels and clinicopathological parameters were analyzed and the predictive value of mRNAs for disease progression was evaluated.
The urinary expression of CCL2, CD14, DNMT1, FKBP5, Nephrin, and IL-6 was significantly upregulated in patients with IgAN compared with healthy controls. C3, FLOT1, and Podocin levels were significantly correlated with renal function, where C3, FLOT1, and TfR levels were significantly correlated with urinary protein excretion. During follow-up, 26 (13.0%) patients with IgAN experienced disease progression, defined as a greater than 50% reduction in the estimated glomerular filtration rate or progression to end-stage renal disease. Urinary mRNA levels of FLOT1 (HR 3.706, 95% CI 1.373-10.005, P = 0.010) were independently associated with an increased risk of disease progression.
Our results suggest that urinary sediment mRNAs are a useful biomarker in IgAN patients. Further studies with larger sample sizes and longer follow-up durations are required. |
doi_str_mv | 10.1186/s12882-024-03696-7 |
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Overall, 200 patients with biopsy-proven IgAN, 48 disease controls, and 76 healthy controls were enrolled. We identified the differential expression of mRNAs in renal tissue between patients with IgAN and normal subjects using the Gene Expression Omnibus dataset and selected candidate mRNAs. mRNA expression in the urinary sediment was measured using quantitative real-time polymerase chain reaction. Associations between urinary mRNA levels and clinicopathological parameters were analyzed and the predictive value of mRNAs for disease progression was evaluated.
The urinary expression of CCL2, CD14, DNMT1, FKBP5, Nephrin, and IL-6 was significantly upregulated in patients with IgAN compared with healthy controls. C3, FLOT1, and Podocin levels were significantly correlated with renal function, where C3, FLOT1, and TfR levels were significantly correlated with urinary protein excretion. During follow-up, 26 (13.0%) patients with IgAN experienced disease progression, defined as a greater than 50% reduction in the estimated glomerular filtration rate or progression to end-stage renal disease. Urinary mRNA levels of FLOT1 (HR 3.706, 95% CI 1.373-10.005, P = 0.010) were independently associated with an increased risk of disease progression.
Our results suggest that urinary sediment mRNAs are a useful biomarker in IgAN patients. Further studies with larger sample sizes and longer follow-up durations are required.</description><identifier>ISSN: 1471-2369</identifier><identifier>EISSN: 1471-2369</identifier><identifier>DOI: 10.1186/s12882-024-03696-7</identifier><identifier>PMID: 39516745</identifier><language>eng</language><publisher>England: BioMed Central Ltd</publisher><subject>Adult ; Analysis ; Biomarker ; Biomarkers ; Biomarkers - urine ; Biopsy ; Candidates ; Care and treatment ; CD14 antigen ; Chronic kidney failure ; Clinical outcomes ; Creatinine ; Datasets ; Development and progression ; Diabetes ; Disease control ; Disease Progression ; DNMT1 protein ; End-stage renal disease ; Enzymes ; Female ; Gene expression ; Genetic aspects ; Glomerular filtration rate ; Glomerulonephritis, IGA - genetics ; Glomerulonephritis, IGA - urine ; Hospitals ; Humans ; Hypertension ; IgA glomerulonephritis ; IgA nephropathy ; Immunoglobulin A ; Immunosuppressive agents ; Kidney diseases ; Kidneys ; Male ; Messenger RNA ; Meta-analysis ; Middle Aged ; Monocyte chemoattractant protein 1 ; Pathogenesis ; Prevention ; Proteins ; Regression analysis ; Renal function ; Risk assessment ; Risk factors ; RNA, Messenger - urine ; Sediments ; Urinary mRNA ; Urine</subject><ispartof>BMC nephrology, 2024-11, Vol.25 (1), p.401-10, Article 401</ispartof><rights>2024. The Author(s).</rights><rights>COPYRIGHT 2024 BioMed Central Ltd.</rights><rights>2024. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>The Author(s) 2024 2024</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c445t-9337be449dc61328528b2d2c2ab76a31ac5a8d9a737ed769b21d65c3840a3a343</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC11549797/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/3126415079?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,25753,27924,27925,37012,37013,44590,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39516745$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Kim, Jin Sug</creatorcontrib><creatorcontrib>Kim, Geon Woo</creatorcontrib><creatorcontrib>Hwang, Hyeon Seok</creatorcontrib><creatorcontrib>Kim, Yang Gyun</creatorcontrib><creatorcontrib>Moon, Ju-Young</creatorcontrib><creatorcontrib>Lee, Sang Ho</creatorcontrib><creatorcontrib>Seok, Junhee</creatorcontrib><creatorcontrib>Tae, Donghyun</creatorcontrib><creatorcontrib>Jeong, Kyung Hwan</creatorcontrib><title>Urinary sediment mRNA as a potent biomarker of IgA nephropathy</title><title>BMC nephrology</title><addtitle>BMC Nephrol</addtitle><description>The quantification of mRNA expression in urinary sediments is a reliable biomarker for various diseases. However, few studies have investigated the clinical relevance of urinary mRNA levels in IgA nephropathy (IgAN). Thus, we investigated the expression of urinary mRNAs and their clinical significance in IgAN.
Overall, 200 patients with biopsy-proven IgAN, 48 disease controls, and 76 healthy controls were enrolled. We identified the differential expression of mRNAs in renal tissue between patients with IgAN and normal subjects using the Gene Expression Omnibus dataset and selected candidate mRNAs. mRNA expression in the urinary sediment was measured using quantitative real-time polymerase chain reaction. Associations between urinary mRNA levels and clinicopathological parameters were analyzed and the predictive value of mRNAs for disease progression was evaluated.
The urinary expression of CCL2, CD14, DNMT1, FKBP5, Nephrin, and IL-6 was significantly upregulated in patients with IgAN compared with healthy controls. C3, FLOT1, and Podocin levels were significantly correlated with renal function, where C3, FLOT1, and TfR levels were significantly correlated with urinary protein excretion. During follow-up, 26 (13.0%) patients with IgAN experienced disease progression, defined as a greater than 50% reduction in the estimated glomerular filtration rate or progression to end-stage renal disease. Urinary mRNA levels of FLOT1 (HR 3.706, 95% CI 1.373-10.005, P = 0.010) were independently associated with an increased risk of disease progression.
Our results suggest that urinary sediment mRNAs are a useful biomarker in IgAN patients. Further studies with larger sample sizes and longer follow-up durations are required.</description><subject>Adult</subject><subject>Analysis</subject><subject>Biomarker</subject><subject>Biomarkers</subject><subject>Biomarkers - urine</subject><subject>Biopsy</subject><subject>Candidates</subject><subject>Care and treatment</subject><subject>CD14 antigen</subject><subject>Chronic kidney failure</subject><subject>Clinical outcomes</subject><subject>Creatinine</subject><subject>Datasets</subject><subject>Development and progression</subject><subject>Diabetes</subject><subject>Disease control</subject><subject>Disease Progression</subject><subject>DNMT1 protein</subject><subject>End-stage renal disease</subject><subject>Enzymes</subject><subject>Female</subject><subject>Gene expression</subject><subject>Genetic aspects</subject><subject>Glomerular filtration rate</subject><subject>Glomerulonephritis, IGA - genetics</subject><subject>Glomerulonephritis, IGA - urine</subject><subject>Hospitals</subject><subject>Humans</subject><subject>Hypertension</subject><subject>IgA glomerulonephritis</subject><subject>IgA nephropathy</subject><subject>Immunoglobulin A</subject><subject>Immunosuppressive agents</subject><subject>Kidney diseases</subject><subject>Kidneys</subject><subject>Male</subject><subject>Messenger RNA</subject><subject>Meta-analysis</subject><subject>Middle Aged</subject><subject>Monocyte chemoattractant protein 1</subject><subject>Pathogenesis</subject><subject>Prevention</subject><subject>Proteins</subject><subject>Regression analysis</subject><subject>Renal function</subject><subject>Risk assessment</subject><subject>Risk factors</subject><subject>RNA, Messenger - urine</subject><subject>Sediments</subject><subject>Urinary mRNA</subject><subject>Urine</subject><issn>1471-2369</issn><issn>1471-2369</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><sourceid>DOA</sourceid><recordid>eNptkk1v1DAQhi0EoqXwBzigSFy4pPj74wJaVXysVIGE6NmaOM6ulyQOdhZp_z1Ot5QuQjk4Hr_zeGb8IvSS4EtCtHybCdWa1pjyGjNpZK0eoXPCFalp2T5-8H-GnuW8w5gozfFTdMaMIFJxcY7e3aQwQjpU2bdh8ONcDd--rCrIFVRTnJdAE-IA6YdPVeyq9WZVjX7apjjBvD08R0866LN_cbdeoJuPH75ffa6vv35aX62ua8e5mGvDmGo856Z1kjCqBdUNbamj0CgJjIAToFsDiinfKmkaSlopHCvVAgPG2QVaH7lthJ2dUigVHWyEYG8DMW0spDm43lvqDGZKEkM95pRKTZjUQnRgBFdCqcJ6f2RN-2bwrSs9JuhPoKcnY9jaTfxlCRHcKLMQ3twRUvy593m2Q8jO9z2MPu6zZeVhFMdYLtLX_0h3cZ_GMqtFJTkRWJm_qg2UDsLYxXKxW6B2pYkoE6NyUV3-R1W-1g_BxdF3ocRPEugxwaWYc_LdfZME28VC9mghWyxkby1kl4pfPRzPfcofz7DfjSa83Q</recordid><startdate>20241108</startdate><enddate>20241108</enddate><creator>Kim, Jin Sug</creator><creator>Kim, Geon Woo</creator><creator>Hwang, Hyeon Seok</creator><creator>Kim, Yang Gyun</creator><creator>Moon, Ju-Young</creator><creator>Lee, Sang Ho</creator><creator>Seok, Junhee</creator><creator>Tae, Donghyun</creator><creator>Jeong, Kyung Hwan</creator><general>BioMed Central Ltd</general><general>BioMed Central</general><general>BMC</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QP</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>K9.</scope><scope>M0S</scope><scope>M1P</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20241108</creationdate><title>Urinary sediment mRNA as a potent biomarker of IgA nephropathy</title><author>Kim, Jin Sug ; Kim, Geon Woo ; Hwang, Hyeon Seok ; Kim, Yang Gyun ; Moon, Ju-Young ; Lee, Sang Ho ; Seok, Junhee ; Tae, Donghyun ; Jeong, Kyung Hwan</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c445t-9337be449dc61328528b2d2c2ab76a31ac5a8d9a737ed769b21d65c3840a3a343</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Adult</topic><topic>Analysis</topic><topic>Biomarker</topic><topic>Biomarkers</topic><topic>Biomarkers - urine</topic><topic>Biopsy</topic><topic>Candidates</topic><topic>Care and treatment</topic><topic>CD14 antigen</topic><topic>Chronic kidney failure</topic><topic>Clinical outcomes</topic><topic>Creatinine</topic><topic>Datasets</topic><topic>Development and progression</topic><topic>Diabetes</topic><topic>Disease control</topic><topic>Disease Progression</topic><topic>DNMT1 protein</topic><topic>End-stage renal disease</topic><topic>Enzymes</topic><topic>Female</topic><topic>Gene expression</topic><topic>Genetic aspects</topic><topic>Glomerular filtration rate</topic><topic>Glomerulonephritis, IGA - genetics</topic><topic>Glomerulonephritis, IGA - urine</topic><topic>Hospitals</topic><topic>Humans</topic><topic>Hypertension</topic><topic>IgA glomerulonephritis</topic><topic>IgA nephropathy</topic><topic>Immunoglobulin A</topic><topic>Immunosuppressive agents</topic><topic>Kidney diseases</topic><topic>Kidneys</topic><topic>Male</topic><topic>Messenger RNA</topic><topic>Meta-analysis</topic><topic>Middle Aged</topic><topic>Monocyte chemoattractant protein 1</topic><topic>Pathogenesis</topic><topic>Prevention</topic><topic>Proteins</topic><topic>Regression analysis</topic><topic>Renal function</topic><topic>Risk assessment</topic><topic>Risk factors</topic><topic>RNA, Messenger - urine</topic><topic>Sediments</topic><topic>Urinary mRNA</topic><topic>Urine</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Kim, Jin Sug</creatorcontrib><creatorcontrib>Kim, Geon Woo</creatorcontrib><creatorcontrib>Hwang, Hyeon Seok</creatorcontrib><creatorcontrib>Kim, Yang Gyun</creatorcontrib><creatorcontrib>Moon, Ju-Young</creatorcontrib><creatorcontrib>Lee, Sang Ho</creatorcontrib><creatorcontrib>Seok, Junhee</creatorcontrib><creatorcontrib>Tae, Donghyun</creatorcontrib><creatorcontrib>Jeong, Kyung Hwan</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central</collection><collection>ProQuest Central Essentials</collection><collection>AUTh Library subscriptions: ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>BMC nephrology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Kim, Jin Sug</au><au>Kim, Geon Woo</au><au>Hwang, Hyeon Seok</au><au>Kim, Yang Gyun</au><au>Moon, Ju-Young</au><au>Lee, Sang Ho</au><au>Seok, Junhee</au><au>Tae, Donghyun</au><au>Jeong, Kyung Hwan</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Urinary sediment mRNA as a potent biomarker of IgA nephropathy</atitle><jtitle>BMC nephrology</jtitle><addtitle>BMC Nephrol</addtitle><date>2024-11-08</date><risdate>2024</risdate><volume>25</volume><issue>1</issue><spage>401</spage><epage>10</epage><pages>401-10</pages><artnum>401</artnum><issn>1471-2369</issn><eissn>1471-2369</eissn><abstract>The quantification of mRNA expression in urinary sediments is a reliable biomarker for various diseases. However, few studies have investigated the clinical relevance of urinary mRNA levels in IgA nephropathy (IgAN). Thus, we investigated the expression of urinary mRNAs and their clinical significance in IgAN.
Overall, 200 patients with biopsy-proven IgAN, 48 disease controls, and 76 healthy controls were enrolled. We identified the differential expression of mRNAs in renal tissue between patients with IgAN and normal subjects using the Gene Expression Omnibus dataset and selected candidate mRNAs. mRNA expression in the urinary sediment was measured using quantitative real-time polymerase chain reaction. Associations between urinary mRNA levels and clinicopathological parameters were analyzed and the predictive value of mRNAs for disease progression was evaluated.
The urinary expression of CCL2, CD14, DNMT1, FKBP5, Nephrin, and IL-6 was significantly upregulated in patients with IgAN compared with healthy controls. C3, FLOT1, and Podocin levels were significantly correlated with renal function, where C3, FLOT1, and TfR levels were significantly correlated with urinary protein excretion. During follow-up, 26 (13.0%) patients with IgAN experienced disease progression, defined as a greater than 50% reduction in the estimated glomerular filtration rate or progression to end-stage renal disease. Urinary mRNA levels of FLOT1 (HR 3.706, 95% CI 1.373-10.005, P = 0.010) were independently associated with an increased risk of disease progression.
Our results suggest that urinary sediment mRNAs are a useful biomarker in IgAN patients. Further studies with larger sample sizes and longer follow-up durations are required.</abstract><cop>England</cop><pub>BioMed Central Ltd</pub><pmid>39516745</pmid><doi>10.1186/s12882-024-03696-7</doi><tpages>10</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Adult Analysis Biomarker Biomarkers Biomarkers - urine Biopsy Candidates Care and treatment CD14 antigen Chronic kidney failure Clinical outcomes Creatinine Datasets Development and progression Diabetes Disease control Disease Progression DNMT1 protein End-stage renal disease Enzymes Female Gene expression Genetic aspects Glomerular filtration rate Glomerulonephritis, IGA - genetics Glomerulonephritis, IGA - urine Hospitals Humans Hypertension IgA glomerulonephritis IgA nephropathy Immunoglobulin A Immunosuppressive agents Kidney diseases Kidneys Male Messenger RNA Meta-analysis Middle Aged Monocyte chemoattractant protein 1 Pathogenesis Prevention Proteins Regression analysis Renal function Risk assessment Risk factors RNA, Messenger - urine Sediments Urinary mRNA Urine |
title | Urinary sediment mRNA as a potent biomarker of IgA nephropathy |
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