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Draft Genome of the European Mouflon ( Ovis orientalis musimon )
Mouflon ( ) with its huge and beautiful horns is considered as one of the ancestors of domesticated sheep. The European mouflon ( ) is in the Asiatic mouflon ( ) clade. In order to provide novel genome information for mouflon, moreover promote genetic analysis of genus both domestic and wild, we pro...
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Published in: | Frontiers in genetics 2020-11, Vol.11, p.533611-533611 |
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creator | Su, Rui Qiao, Xian Gao, Yun Li, Xiaokai Jiang, Wei Chen, Wei Fan, Yixing Zheng, Bingwu Zhang, Yanjun Liu, Zhihong Wang, Ruijun Wang, Zhiying Wang, Zhixin Wan, Wenting Dong, Yang Li, Jinquan |
description | Mouflon (
) with its huge and beautiful horns is considered as one of the ancestors of domesticated sheep. The European mouflon (
) is in the Asiatic mouflon (
) clade. In order to provide novel genome information for mouflon, moreover promote genetic analysis of genus
both domestic and wild, we propose to sequence the mouflon genome. We assembled the highly heterozygous mouflon genome based on Illumina HiSeq platform using the next-generation sequencing technology. Finally, the draft genome we accessed approximately 2.69 Gb (42.15% GC), while N50 sizes of contig and scaffold are 110.1 kb and 10.4 Mb, respectively. The contiguity of this assembly is obviously better than earlier versions. Further analyses predicted 20,814 protein-coding genes in the mouflon genome and 12,390 shared gene families among bovine species. It is estimated that the divergence time between
and
was 7.6 million years ago. The draft mouflon genome assembly will provide data support and theoretical basis for various investigations of the genus
species in future. |
doi_str_mv | 10.3389/fgene.2020.533611 |
format | article |
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) with its huge and beautiful horns is considered as one of the ancestors of domesticated sheep. The European mouflon (
) is in the Asiatic mouflon (
) clade. In order to provide novel genome information for mouflon, moreover promote genetic analysis of genus
both domestic and wild, we propose to sequence the mouflon genome. We assembled the highly heterozygous mouflon genome based on Illumina HiSeq platform using the next-generation sequencing technology. Finally, the draft genome we accessed approximately 2.69 Gb (42.15% GC), while N50 sizes of contig and scaffold are 110.1 kb and 10.4 Mb, respectively. The contiguity of this assembly is obviously better than earlier versions. Further analyses predicted 20,814 protein-coding genes in the mouflon genome and 12,390 shared gene families among bovine species. It is estimated that the divergence time between
and
was 7.6 million years ago. The draft mouflon genome assembly will provide data support and theoretical basis for various investigations of the genus
species in future.</description><identifier>ISSN: 1664-8021</identifier><identifier>EISSN: 1664-8021</identifier><identifier>DOI: 10.3389/fgene.2020.533611</identifier><identifier>PMID: 33329689</identifier><language>eng</language><publisher>Switzerland: Frontiers Media S.A</publisher><subject>de novo genome assembly ; Genetics ; genus Ovis ; Illumina sequencing ; mouflon ; Ovis orientalis musimon</subject><ispartof>Frontiers in genetics, 2020-11, Vol.11, p.533611-533611</ispartof><rights>Copyright © 2020 Su, Qiao, Gao, Li, Jiang, Chen, Fan, Zheng, Zhang, Liu, Wang, Wang, Wang, Wan, Dong and Li.</rights><rights>Copyright © 2020 Su, Qiao, Gao, Li, Jiang, Chen, Fan, Zheng, Zhang, Liu, Wang, Wang, Wang, Wan, Dong and Li. 2020 Su, Qiao, Gao, Li, Jiang, Chen, Fan, Zheng, Zhang, Liu, Wang, Wang, Wang, Wan, Dong and Li</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c465t-c160f12013051285a9b682b7c8b77cdfdc7b6f498bc19673e478d7c90c8a70b13</citedby><cites>FETCH-LOGICAL-c465t-c160f12013051285a9b682b7c8b77cdfdc7b6f498bc19673e478d7c90c8a70b13</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7710762/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7710762/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33329689$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Su, Rui</creatorcontrib><creatorcontrib>Qiao, Xian</creatorcontrib><creatorcontrib>Gao, Yun</creatorcontrib><creatorcontrib>Li, Xiaokai</creatorcontrib><creatorcontrib>Jiang, Wei</creatorcontrib><creatorcontrib>Chen, Wei</creatorcontrib><creatorcontrib>Fan, Yixing</creatorcontrib><creatorcontrib>Zheng, Bingwu</creatorcontrib><creatorcontrib>Zhang, Yanjun</creatorcontrib><creatorcontrib>Liu, Zhihong</creatorcontrib><creatorcontrib>Wang, Ruijun</creatorcontrib><creatorcontrib>Wang, Zhiying</creatorcontrib><creatorcontrib>Wang, Zhixin</creatorcontrib><creatorcontrib>Wan, Wenting</creatorcontrib><creatorcontrib>Dong, Yang</creatorcontrib><creatorcontrib>Li, Jinquan</creatorcontrib><title>Draft Genome of the European Mouflon ( Ovis orientalis musimon )</title><title>Frontiers in genetics</title><addtitle>Front Genet</addtitle><description>Mouflon (
) with its huge and beautiful horns is considered as one of the ancestors of domesticated sheep. The European mouflon (
) is in the Asiatic mouflon (
) clade. In order to provide novel genome information for mouflon, moreover promote genetic analysis of genus
both domestic and wild, we propose to sequence the mouflon genome. We assembled the highly heterozygous mouflon genome based on Illumina HiSeq platform using the next-generation sequencing technology. Finally, the draft genome we accessed approximately 2.69 Gb (42.15% GC), while N50 sizes of contig and scaffold are 110.1 kb and 10.4 Mb, respectively. The contiguity of this assembly is obviously better than earlier versions. Further analyses predicted 20,814 protein-coding genes in the mouflon genome and 12,390 shared gene families among bovine species. It is estimated that the divergence time between
and
was 7.6 million years ago. The draft mouflon genome assembly will provide data support and theoretical basis for various investigations of the genus
species in future.</description><subject>de novo genome assembly</subject><subject>Genetics</subject><subject>genus Ovis</subject><subject>Illumina sequencing</subject><subject>mouflon</subject><subject>Ovis orientalis musimon</subject><issn>1664-8021</issn><issn>1664-8021</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>DOA</sourceid><recordid>eNpVkUtLAzEQgIMoVqo_wIvsUQ-teTWPiyg-C0oveg7Z7KRd2d3UZFfw3xttFc1lhszMNwkfQscETxlT-twvoYMpxRRPZ4wJQnbQARGCTxSmZPdPPkJHKb3ifLhmjPF9NMqBaqH0Abq8idb3xT10oYUi-KJfQXE7xLAG2xVPYfBN6IrTYvFepyLEGrreNjlth1S3uXJ2iPa8bRIcbeMYvdzdPl8_TB4X9_Prq8eJ42LWTxwR2BOKCcMzQtXM6lIoWkqnSild5SsnS-G5VqUjWkgGXKpKOo2dshKXhI3RfMOtgn0161i3Nn6YYGvzfRHi0tjY164BQ53WlfMV8KrkFLB11GoGDJwVwCxk1sWGtR7KFiqXPxVt8w_6v9LVK7MM70ZKgqWgGXC6BcTwNkDqTVsnB01jOwhDMpRLrDFWTOZWsml1MaQUwf-uIdh8iTTfIs2XSLMRmWdO_r7vd-JHG_sEOi6aMA</recordid><startdate>20201119</startdate><enddate>20201119</enddate><creator>Su, Rui</creator><creator>Qiao, Xian</creator><creator>Gao, Yun</creator><creator>Li, Xiaokai</creator><creator>Jiang, Wei</creator><creator>Chen, Wei</creator><creator>Fan, Yixing</creator><creator>Zheng, Bingwu</creator><creator>Zhang, Yanjun</creator><creator>Liu, Zhihong</creator><creator>Wang, Ruijun</creator><creator>Wang, Zhiying</creator><creator>Wang, Zhixin</creator><creator>Wan, Wenting</creator><creator>Dong, Yang</creator><creator>Li, Jinquan</creator><general>Frontiers Media S.A</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20201119</creationdate><title>Draft Genome of the European Mouflon ( Ovis orientalis musimon )</title><author>Su, Rui ; Qiao, Xian ; Gao, Yun ; Li, Xiaokai ; Jiang, Wei ; Chen, Wei ; Fan, Yixing ; Zheng, Bingwu ; Zhang, Yanjun ; Liu, Zhihong ; Wang, Ruijun ; Wang, Zhiying ; Wang, Zhixin ; Wan, Wenting ; Dong, Yang ; Li, Jinquan</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c465t-c160f12013051285a9b682b7c8b77cdfdc7b6f498bc19673e478d7c90c8a70b13</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>de novo genome assembly</topic><topic>Genetics</topic><topic>genus Ovis</topic><topic>Illumina sequencing</topic><topic>mouflon</topic><topic>Ovis orientalis musimon</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Su, Rui</creatorcontrib><creatorcontrib>Qiao, Xian</creatorcontrib><creatorcontrib>Gao, Yun</creatorcontrib><creatorcontrib>Li, Xiaokai</creatorcontrib><creatorcontrib>Jiang, Wei</creatorcontrib><creatorcontrib>Chen, Wei</creatorcontrib><creatorcontrib>Fan, Yixing</creatorcontrib><creatorcontrib>Zheng, Bingwu</creatorcontrib><creatorcontrib>Zhang, Yanjun</creatorcontrib><creatorcontrib>Liu, Zhihong</creatorcontrib><creatorcontrib>Wang, Ruijun</creatorcontrib><creatorcontrib>Wang, Zhiying</creatorcontrib><creatorcontrib>Wang, Zhixin</creatorcontrib><creatorcontrib>Wan, Wenting</creatorcontrib><creatorcontrib>Dong, Yang</creatorcontrib><creatorcontrib>Li, Jinquan</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Frontiers in genetics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Su, Rui</au><au>Qiao, Xian</au><au>Gao, Yun</au><au>Li, Xiaokai</au><au>Jiang, Wei</au><au>Chen, Wei</au><au>Fan, Yixing</au><au>Zheng, Bingwu</au><au>Zhang, Yanjun</au><au>Liu, Zhihong</au><au>Wang, Ruijun</au><au>Wang, Zhiying</au><au>Wang, Zhixin</au><au>Wan, Wenting</au><au>Dong, Yang</au><au>Li, Jinquan</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Draft Genome of the European Mouflon ( Ovis orientalis musimon )</atitle><jtitle>Frontiers in genetics</jtitle><addtitle>Front Genet</addtitle><date>2020-11-19</date><risdate>2020</risdate><volume>11</volume><spage>533611</spage><epage>533611</epage><pages>533611-533611</pages><issn>1664-8021</issn><eissn>1664-8021</eissn><abstract>Mouflon (
) with its huge and beautiful horns is considered as one of the ancestors of domesticated sheep. The European mouflon (
) is in the Asiatic mouflon (
) clade. In order to provide novel genome information for mouflon, moreover promote genetic analysis of genus
both domestic and wild, we propose to sequence the mouflon genome. We assembled the highly heterozygous mouflon genome based on Illumina HiSeq platform using the next-generation sequencing technology. Finally, the draft genome we accessed approximately 2.69 Gb (42.15% GC), while N50 sizes of contig and scaffold are 110.1 kb and 10.4 Mb, respectively. The contiguity of this assembly is obviously better than earlier versions. Further analyses predicted 20,814 protein-coding genes in the mouflon genome and 12,390 shared gene families among bovine species. It is estimated that the divergence time between
and
was 7.6 million years ago. The draft mouflon genome assembly will provide data support and theoretical basis for various investigations of the genus
species in future.</abstract><cop>Switzerland</cop><pub>Frontiers Media S.A</pub><pmid>33329689</pmid><doi>10.3389/fgene.2020.533611</doi><tpages>1</tpages><oa>free_for_read</oa></addata></record> |
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subjects | de novo genome assembly Genetics genus Ovis Illumina sequencing mouflon Ovis orientalis musimon |
title | Draft Genome of the European Mouflon ( Ovis orientalis musimon ) |
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