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Integration of Metabolome and Transcriptome Studies Reveals Flavonoids, Abscisic Acid, and Nitric Oxide Comodulating the Freezing Tolerance in Liriope spicata
is an evergreen perennial ornamental groundcover with a strong freezing tolerance. However, the molecular mechanism underlying the freezing tolerance in remains unclear. In this study, a comprehensive investigation of freezing tolerance was conducted at the levels of physiology and biochemistry, met...
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| Published in: | Frontiers in plant science 2022-01, Vol.12, p.764625-764625 |
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| creator | Peng, Zhen Wang, Ye Zuo, Wen-Tian Gao, Yue-Rong Li, Run-Zhi Yu, Chun-Xin Liu, Zi-Yan Zheng, Yi Shen, Yuan-Yue Duan, Liu-Sheng |
| description | is an evergreen perennial ornamental groundcover with a strong freezing tolerance. However, the molecular mechanism underlying the freezing tolerance in
remains unclear. In this study, a comprehensive investigation of
freezing tolerance was conducted at the levels of physiology and biochemistry, metabolite, and transcript during the stress treatment. There were 581 unique differentially expressed metabolites (DEMs) and 10,444 unique differentially expressed genes (DEGs) between freezing treatment and normal cultured plant in leaves. Integrated analysis of metabolomics and transcriptomics showed that flavonoid biosynthesis, carbohydrate metabolism, amino acid metabolism, lipid metabolism, and signal transduction pathways were prominently enriched in response to the freezing stress in
.
. Now, we identified genes and metabolites involved in the flavonoid pathway, abscisic acid (ABA) biosynthesis, and the oxidative synthesis pathway of nitric oxide (NO), which may form a regulatory network and play a synergistic effect in osmotic adjustment, reactive oxygen species (ROS) homeostasis, and stomatal closure under freezing stress. These results offer a comprehensive network of flavonoids, ABA, and NO comodulating the freezing tolerance in
. |
| doi_str_mv | 10.3389/fpls.2021.764625 |
| format | article |
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remains unclear. In this study, a comprehensive investigation of
freezing tolerance was conducted at the levels of physiology and biochemistry, metabolite, and transcript during the stress treatment. There were 581 unique differentially expressed metabolites (DEMs) and 10,444 unique differentially expressed genes (DEGs) between freezing treatment and normal cultured plant in leaves. Integrated analysis of metabolomics and transcriptomics showed that flavonoid biosynthesis, carbohydrate metabolism, amino acid metabolism, lipid metabolism, and signal transduction pathways were prominently enriched in response to the freezing stress in
.
. Now, we identified genes and metabolites involved in the flavonoid pathway, abscisic acid (ABA) biosynthesis, and the oxidative synthesis pathway of nitric oxide (NO), which may form a regulatory network and play a synergistic effect in osmotic adjustment, reactive oxygen species (ROS) homeostasis, and stomatal closure under freezing stress. These results offer a comprehensive network of flavonoids, ABA, and NO comodulating the freezing tolerance in
.</description><identifier>ISSN: 1664-462X</identifier><identifier>EISSN: 1664-462X</identifier><identifier>DOI: 10.3389/fpls.2021.764625</identifier><identifier>PMID: 35154173</identifier><language>eng</language><publisher>Switzerland: Frontiers Media S.A</publisher><subject>ABA ; flavonoids ; freezing stress ; Liriope spicata ; metabolomics ; Plant Science ; transcriptomics</subject><ispartof>Frontiers in plant science, 2022-01, Vol.12, p.764625-764625</ispartof><rights>Copyright © 2022 Peng, Wang, Zuo, Gao, Li, Yu, Liu, Zheng, Shen and Duan.</rights><rights>Copyright © 2022 Peng, Wang, Zuo, Gao, Li, Yu, Liu, Zheng, Shen and Duan. 2022 Peng, Wang, Zuo, Gao, Li, Yu, Liu, Zheng, Shen and Duan</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c462t-f47730a9de7b1c1cb9da6c620459934900f53f7d6f3cfa98fceb76b9567ab89b3</citedby><cites>FETCH-LOGICAL-c462t-f47730a9de7b1c1cb9da6c620459934900f53f7d6f3cfa98fceb76b9567ab89b3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8828910/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8828910/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/35154173$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Peng, Zhen</creatorcontrib><creatorcontrib>Wang, Ye</creatorcontrib><creatorcontrib>Zuo, Wen-Tian</creatorcontrib><creatorcontrib>Gao, Yue-Rong</creatorcontrib><creatorcontrib>Li, Run-Zhi</creatorcontrib><creatorcontrib>Yu, Chun-Xin</creatorcontrib><creatorcontrib>Liu, Zi-Yan</creatorcontrib><creatorcontrib>Zheng, Yi</creatorcontrib><creatorcontrib>Shen, Yuan-Yue</creatorcontrib><creatorcontrib>Duan, Liu-Sheng</creatorcontrib><title>Integration of Metabolome and Transcriptome Studies Reveals Flavonoids, Abscisic Acid, and Nitric Oxide Comodulating the Freezing Tolerance in Liriope spicata</title><title>Frontiers in plant science</title><addtitle>Front Plant Sci</addtitle><description>is an evergreen perennial ornamental groundcover with a strong freezing tolerance. However, the molecular mechanism underlying the freezing tolerance in
remains unclear. In this study, a comprehensive investigation of
freezing tolerance was conducted at the levels of physiology and biochemistry, metabolite, and transcript during the stress treatment. There were 581 unique differentially expressed metabolites (DEMs) and 10,444 unique differentially expressed genes (DEGs) between freezing treatment and normal cultured plant in leaves. Integrated analysis of metabolomics and transcriptomics showed that flavonoid biosynthesis, carbohydrate metabolism, amino acid metabolism, lipid metabolism, and signal transduction pathways were prominently enriched in response to the freezing stress in
.
. Now, we identified genes and metabolites involved in the flavonoid pathway, abscisic acid (ABA) biosynthesis, and the oxidative synthesis pathway of nitric oxide (NO), which may form a regulatory network and play a synergistic effect in osmotic adjustment, reactive oxygen species (ROS) homeostasis, and stomatal closure under freezing stress. These results offer a comprehensive network of flavonoids, ABA, and NO comodulating the freezing tolerance in
.</description><subject>ABA</subject><subject>flavonoids</subject><subject>freezing stress</subject><subject>Liriope spicata</subject><subject>metabolomics</subject><subject>Plant Science</subject><subject>transcriptomics</subject><issn>1664-462X</issn><issn>1664-462X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>DOA</sourceid><recordid>eNpVUstuEzEUHSEQrUr3rJCXLJrgx4w93iBFEYFIgUoQJHaWH3dSV5PxYDsR8DF8K56mVK03vj4-D1s6VfWa4DljrXzXjX2aU0zJXPCa0-ZZdU44r2dl_vH80XxWXaZ0i8tqMJZSvKzOWEOamgh2Xv1dDxl2UWcfBhQ69BmyNqEPe0B6cGgb9ZBs9GOekG_54Dwk9BWOoPuEVr0-hiF4l67QwiTrk7doYb27uhN_8TkW4PqXd4CWYR_coS9Bww7lG0CrCPBnOmxDDyXGAvID2vjowwgojd7qrF9VL7qSBJf3-0X1ffVhu_w021x_XC8Xm5ktP8yzrhaCYS0dCEMssUY6zS2nuG6kZLXEuGtYJxzvmO20bDsLRnAjGy60aaVhF9X65OuCvlVj9Hsdf6ugvboDQtwpHbO3PSgKXEsjKUjMamxBW-Kko02DDSZO0OL1_uQ1HswenIUhR90_MX16M_gbtQtH1ba0lQQXg7f3BjH8PEDKau-Thb7XA4RDUpTTlotCrQsVn6g2hpQidA8xBKupJWpqiZpaok4tKZI3j5_3IPjfCfYPT1e9CQ</recordid><startdate>20220127</startdate><enddate>20220127</enddate><creator>Peng, Zhen</creator><creator>Wang, Ye</creator><creator>Zuo, Wen-Tian</creator><creator>Gao, Yue-Rong</creator><creator>Li, Run-Zhi</creator><creator>Yu, Chun-Xin</creator><creator>Liu, Zi-Yan</creator><creator>Zheng, Yi</creator><creator>Shen, Yuan-Yue</creator><creator>Duan, Liu-Sheng</creator><general>Frontiers Media S.A</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20220127</creationdate><title>Integration of Metabolome and Transcriptome Studies Reveals Flavonoids, Abscisic Acid, and Nitric Oxide Comodulating the Freezing Tolerance in Liriope spicata</title><author>Peng, Zhen ; Wang, Ye ; Zuo, Wen-Tian ; Gao, Yue-Rong ; Li, Run-Zhi ; Yu, Chun-Xin ; Liu, Zi-Yan ; Zheng, Yi ; Shen, Yuan-Yue ; Duan, Liu-Sheng</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c462t-f47730a9de7b1c1cb9da6c620459934900f53f7d6f3cfa98fceb76b9567ab89b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>ABA</topic><topic>flavonoids</topic><topic>freezing stress</topic><topic>Liriope spicata</topic><topic>metabolomics</topic><topic>Plant Science</topic><topic>transcriptomics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Peng, Zhen</creatorcontrib><creatorcontrib>Wang, Ye</creatorcontrib><creatorcontrib>Zuo, Wen-Tian</creatorcontrib><creatorcontrib>Gao, Yue-Rong</creatorcontrib><creatorcontrib>Li, Run-Zhi</creatorcontrib><creatorcontrib>Yu, Chun-Xin</creatorcontrib><creatorcontrib>Liu, Zi-Yan</creatorcontrib><creatorcontrib>Zheng, Yi</creatorcontrib><creatorcontrib>Shen, Yuan-Yue</creatorcontrib><creatorcontrib>Duan, Liu-Sheng</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Frontiers in plant science</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Peng, Zhen</au><au>Wang, Ye</au><au>Zuo, Wen-Tian</au><au>Gao, Yue-Rong</au><au>Li, Run-Zhi</au><au>Yu, Chun-Xin</au><au>Liu, Zi-Yan</au><au>Zheng, Yi</au><au>Shen, Yuan-Yue</au><au>Duan, Liu-Sheng</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Integration of Metabolome and Transcriptome Studies Reveals Flavonoids, Abscisic Acid, and Nitric Oxide Comodulating the Freezing Tolerance in Liriope spicata</atitle><jtitle>Frontiers in plant science</jtitle><addtitle>Front Plant Sci</addtitle><date>2022-01-27</date><risdate>2022</risdate><volume>12</volume><spage>764625</spage><epage>764625</epage><pages>764625-764625</pages><issn>1664-462X</issn><eissn>1664-462X</eissn><abstract>is an evergreen perennial ornamental groundcover with a strong freezing tolerance. However, the molecular mechanism underlying the freezing tolerance in
remains unclear. In this study, a comprehensive investigation of
freezing tolerance was conducted at the levels of physiology and biochemistry, metabolite, and transcript during the stress treatment. There were 581 unique differentially expressed metabolites (DEMs) and 10,444 unique differentially expressed genes (DEGs) between freezing treatment and normal cultured plant in leaves. Integrated analysis of metabolomics and transcriptomics showed that flavonoid biosynthesis, carbohydrate metabolism, amino acid metabolism, lipid metabolism, and signal transduction pathways were prominently enriched in response to the freezing stress in
.
. Now, we identified genes and metabolites involved in the flavonoid pathway, abscisic acid (ABA) biosynthesis, and the oxidative synthesis pathway of nitric oxide (NO), which may form a regulatory network and play a synergistic effect in osmotic adjustment, reactive oxygen species (ROS) homeostasis, and stomatal closure under freezing stress. These results offer a comprehensive network of flavonoids, ABA, and NO comodulating the freezing tolerance in
.</abstract><cop>Switzerland</cop><pub>Frontiers Media S.A</pub><pmid>35154173</pmid><doi>10.3389/fpls.2021.764625</doi><tpages>1</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | ABA flavonoids freezing stress Liriope spicata metabolomics Plant Science transcriptomics |
| title | Integration of Metabolome and Transcriptome Studies Reveals Flavonoids, Abscisic Acid, and Nitric Oxide Comodulating the Freezing Tolerance in Liriope spicata |
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